Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151115g00022 ATGTTTCCGGCGGCATTCACTCTTCTCACGCCCTCTAAGCTCTCTGCTTTCTTCCCTTCTTCTTCTTCTTCACCACATTCACAGCACCTTCTTCTTCATCCAAACAACGCAACAAGACTCTCAATCTTTTCAAAACCCAAACTCTCTCTCCTCCTTCCCAGGCTCAGTTCTACTAACGGTCCTGATGCAACCTCTTCATCCACTTCAGGTATTGATGCAGTCGAGAGCACGTCTTCTGGCCTTGGTGATGGTTATGTGGCCTTATTTGTTCGTATGTTGGGCTTAGATTATGATCCTCTGGATAGAGAGCAAGCTATAATTGCTCTCTGGAAATATTCACTTGGTGGAAAGAAGTGTATTGACACCATAATGCAATTTCCTGGTTGTATTAATCTTATTGCGAACCTCCTTAGATCGGAGTCTAGTGCAACATGCGAGGCAGCCGCAGGTCTTTTGCGATCAATATCTTCAGTCAACCTATATAGGAACTCTGTAGCAGATAGTGGAGCAATAGAAGAGATAAATCGATTGTTGAGGCAATCGTCCTTGGCCACTGAGGTGAAGGAGCAGAGTATGGGTACACTCTGGAATTTATCTGTTGATGAGAAGCTCTGCATGAGACTGGCAAAGAGTGACATTCTACCCTTATGTATTAAATACCTTGATGATGAGGATATGAAAGTAAAAGAAGCTGCTGGAGGCATTTTGGCAAATTTAGCATTGAACCGTAATAACCATGATGCAATGGTTGAAGCAGGTGTTATACCAAAATTGGTAAAGTTCTTAATATCCAATTCAGAAGGTTCTAAAGTTATTAAAAAGGAAGCAAGAAATGCATTGCTTGAACTTGTTAAGAGTGATGATTATTATAGAATTCTTGTTATTGAAGAAGGATTGGTTCCTGTGCCATTAATTGGTGCTGCAGCATATAAGTCATTCACCCCACGTTTACATGTGTGGCCCACATTACCAGATGGAACAGAAATTGAAAAGACTCCTGGAAAAAATTCCAAATATGGTGCATCAGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACATAGACGAAGCAAAAGCCAATGCAATCATTGGACGGACGCAACAGCAATTCCTTGCTCGTATTGGGGCTATAGAAATGGAAGAGAAGACGGTGTCTGAATCCTCAAATGATCAACTGCTTACACTTTTGCCGTGGAGGGATGGTGTTGCTCGTTTGGTCCTGATATTAGAACTTGAAGATAAGTCTGCCATTGTAAGGTCTGCAGAGTCAATTGCTGGTGCATGTATCAACGAACACATGCGCATTGCATTTAAGGAGGCTGGAGCAATTAAAGATTTAGTTCGTCTTTTGTATTGTGATCATAACGAGGTCCAGTTTGCTGTGATACAAGCTTTGGAAAGGCTGTCTGCCAGCAATGTTGTTTGCCGGGTGATTGAAGCTGAGGGTGCTTTACATCCTTTAGTCAGTATTTTAAAGCGCTCAGAAATAGCTGGACCTGTTGTGGAGAAGGCTCTGAACATAGTTGCTCGGATACTAGACCCCAGTAAAGAGATGCAATTGAAGTTTTATGACGGACCAGTTAATGGATCTGAGAAGATGTTTGATAGAACGAAAAGTGAAGTTTCAGCGGGGTTAAGAAGCACAGAACAAGCCATATCAGAAACAAACTTGAGGAATGCTATACTGGAATCTGGTTTCATTTCACGTCTTGTTGAGATTCTGAAGTCCTCTTCACCCAGTTTACAAGAAAAAGCTGCATCCGTGCTCGAGTTTGTTGCACTAGCTGACCAAACGTTGGCCTCTGTTATTTCTGCAGATATTGAATCTGGTCTCAACTCTGTTTTTCAGCAAAAAATTTTGAAAATTTCAGCGGACATGGAATCTGATGTTGAAGAGCAATTTTCAGAAGCATACACAATTGAATTCGAAGAAGCTGGTCGTGCCATATCTGCAGCATCCCGGCTGATGACAAGACTACTTGATAATGAGCAATTCCAGCGGAAAATAGATTCCTCCCATTTCATCGGCTTGCTTCGTGAAATCCTCCGGTCAAGTGTCCCTCTCCATCATAAAGATTGGGTAGCTGCTTGCCTTGTCAAACTAAGTTTTCTCTCTAGTTCCAACACTTCTAATCCAATCAATGTAGAAGTTACACTTTATGAGACTATTCCAAGGCTTCTAGAACAGATTAAAAATTCGTTTTCTCGAGAAACACAGGAAAATGCTGTGGTAGAGCTCAACAGAATAGTGTCTGAAGGAGTGGTGGATTCCAGTGGAGCTATTATTTCCGAGGGAGCGATATATCCATTGGTGAAGCTGATTGAAGAAGGGAGTGAAAGGGCAGTTGAGGCAAGCTTGGCAATACTGTACAATCTGAGTATGGACAGTGACAACCATTCAGCACTCGTGGCTGCCGGAGCAGTCCCGGCCTTGCGAAAAATTATTCTTGCTGAGAGACCACATTGGGAACGGGCCCTTCGTCTGCTTCGAAATTTGCCAACATGA 2514 0.4224 MFPAAFTLLTPSKLSAFFPSSSSSPHSQHLLLHPNNATRLSIFSKPKLSLLLPRLSSTNGPDATSSSTSGIDAVESTSSGLGDGYVALFVRMLGLDYDPLDREQAIIALWKYSLGGKKCIDTIMQFPGCINLIANLLRSESSATCEAAAGLLRSISSVNLYRNSVADSGAIEEINRLLRQSSLATEVKEQSMGTLWNLSVDEKLCMRLAKSDILPLCIKYLDDEDMKVKEAAGGILANLALNRNNHDAMVEAGVIPKLVKFLISNSEGSKVIKKEARNALLELVKSDDYYRILVIEEGLVPVPLIGAAAYKSFTPRLHVWPTLPDGTEIEKTPGKNSKYGASELLLGLNIDDKNANIDEAKANAIIGRTQQQFLARIGAIEMEEKTVSESSNDQLLTLLPWRDGVARLVLILELEDKSAIVRSAESIAGACINEHMRIAFKEAGAIKDLVRLLYCDHNEVQFAVIQALERLSASNVVCRVIEAEGALHPLVSILKRSEIAGPVVEKALNIVARILDPSKEMQLKFYDGPVNGSEKMFDRTKSEVSAGLRSTEQAISETNLRNAILESGFISRLVEILKSSSPSLQEKAASVLEFVALADQTLASVISADIESGLNSVFQQKILKISADMESDVEEQFSEAYTIEFEEAGRAISAASRLMTRLLDNEQFQRKIDSSHFIGLLREILRSSVPLHHKDWVAACLVKLSFLSSSNTSNPINVEVTLYETIPRLLEQIKNSFSRETQENAVVELNRIVSEGVVDSSGAIISEGAIYPLVKLIEEGSERAVEASLAILYNLSMDSDNHSALVAAGAVPALRKIILAERPHWERALRLLRNLPT 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151115g00022 837 Gene3D - 381 617 IPR011989 -
Stsc151115g00022 837 Gene3D - 81 314 IPR011989 -
Stsc151115g00022 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 202 IPR000225 GO:0005515
Stsc151115g00022 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Stsc151115g00022 837 SUPERFAMILY ARM repeat 85 300 IPR016024 -
Stsc151115g00022 837 SMART arm_5 798 837 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 116 157 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 158 200 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 474 516 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 201 241 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 433 473 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 757 797 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 556 597 IPR000225 GO:0005515
Stsc151115g00022 837 SMART arm_5 242 285 IPR000225 GO:0005515
Stsc151115g00022 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 768 810 IPR000225 GO:0005515
Stsc151115g00022 837 Gene3D - 641 836 IPR011989 -
Stsc151115g00022 837 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 60 837 - -
Stsc151115g00022 837 SUPERFAMILY ARM repeat 408 824 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151115g00022 Stsc-Chr151115 111207 117857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151115g00022 128 316 U-box Gene Family AT2G23140 28.319 1.88e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151115g00022 - - gmx:100793128 1146.72