Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151115g00020 ATGATTTATGCAATAAAGGTGGCGATTGCAGATGCATTGGTGACATTTATGTGGGTTTTCATATCAGCGACGTTTGGGTTGATTACAAATTATATAACAAAATTGGTAGATCTTGAGCACCTATCACATGCATATGGTGGTGGTGTTGATTACAGTTCAATAATGGCAACCACTTTAGTGTTCTTCATATTTTTTTGTATATTCAATACACTTTGCAATGCCTTTGGAGGTGCGAGTTTCAACCCCACTGGTAATGCTTCCTTCTATGCTGCTGGTTCTGGCTCTGATTCCCTTTTCTCTATGGCTCTTCGTTTTCCAGCTCAGGCACTAGGTGCAGTTGCTGGTGCTGTGGCAATCATGGAAGTAATTCCATTGAAATACAAGCACATGATTGGTGGGCCAACTTTGAAAGTAGACTTAAAAACAGGAGCTATTGTTGAAGGGGTTTTGACATTTGTGATTAGCTTCATAGTTCTCTTCATCTCACTCAGAGGCCCTCGAAGTTCATCGATGAAGACTTTGTTGATCGCCATCTCAGTTGTCACTTTAGTCAATATAGGATCTGTTTACACAGGCCCCGCCATGAATCCTGCCATTGCCTTTGGTTGGGCATACTTAGAGAATTCACACAACACATGGGACCAATTTTATGTTTATTGGATTTGCCCTTTCATTGGTTCAATATTGGCTGCTTGGTTATTTCGTATTGTGTTTCCACCCATCAAAGTAGTAAAACAGAAGAAAGCTTGA 750 0.4053 MIYAIKVAIADALVTFMWVFISATFGLITNYITKLVDLEHLSHAYGGGVDYSSIMATTLVFFIFFCIFNTLCNAFGGASFNPTGNASFYAAGSGSDSLFSMALRFPAQALGAVAGAVAIMEVIPLKYKHMIGGPTLKVDLKTGAIVEGVLTFVISFIVLFISLRGPRSSSMKTLLIAISVVTLVNIGSVYTGPAMNPAIAFGWAYLENSHNTWDQFYVYWICPFIGSILAAWLFRIVFPPIKVVKQKKA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151115g00020 249 Gene3D Glycerol uptake facilitator protein. 3 247 IPR023271 -
Stsc151115g00020 249 SUPERFAMILY Aquaporin-like 5 241 IPR023271 -
Stsc151115g00020 249 Pfam Major intrinsic protein 5 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151115g00020 249 FunFam Aquaporin SIP1-1 2 249 - -
Stsc151115g00020 249 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151115g00020 249 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151115g00020 249 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151115g00020 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151115g00020 249 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151115g00020 249 PANTHER AQUAPORIN SIP1-1 4 248 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151115g00020 Stsc-Chr151115 103474 105652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151115g00020 4 249 Major Intrinsic Protein MIP AT5G18290 52.610 5.57e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151115g00020 K09875 - gmx:100788738 337.421