Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151115g00017 ATGATGGACCAGCAGCAGCCTTTAGCTTTGGATTTGCCTCCGGGCTTCAGATTCCACCCTACTGATGAGGAGATCATCTCTTATTACCTCACTCCCAAGGTTATGAACACCAGCTTCTGTGCAACCGCCATTGGAGAAGTTGATCTCAACAAGTGTGAGCCATGGGACTTGCCCAAGAAAGCGAAGATGGGGGAGAAAGATTGGTACTTCTTCTGGCAAAGAGATAGGAAGTACCCAACAGGGATGAGAACGAATCGAGCCACGGAATCTGGTTACTGGAAGGCCACCGGAAAAGACAAAGAGATTTTCAAGGGGAAAGGTAATAAAAACCTTGTTGGCATGAAGAAAACTCTTGTGTTCTACAGAGGGAGAGCCCCTAATGGACAAAAAACCAACTGGGTTATGCATGAGTTCAGATTGGAAGGCCCTTTTGCTTCTTACAACCTCCCTAAACCTGCTAAGGAGGAATGGGTTGTGTCCAGGGTTTTCCATAAGAACACAGCAGAAAAATTGATTCCAACTATTCCATCAGAACTCTTTAGGATAATGAAGAACGTGAACTCAATTGGGGATGATGATATTGTAGATTTTTCTTCTCTCCCACCTCTCATGGATCCTTCTAATAATTATGATGATGATCAACACACCAACACCAACAACAACAACAATTATATCAACAATTTGTTGGCGTCAACATCATCATCAGATTATAATTGTCTTCTTCATCAGCAAAACAAGAAGGAAGATAATGATGATGATAATAATCTTCTACTAATAAGAGCAAAGAAAGATATGATGGGAATAAGGAATAATAATAATAGTAGAGGATTATTACTGTATGATCCTCCATCATCATCATCATCTGAAGTAGTTGCTCCTCCTCTCTCTGACTTGGAATTATGCCTCTGGGATGATATATAA 921 0.4083 MMDQQQPLALDLPPGFRFHPTDEEIISYYLTPKVMNTSFCATAIGEVDLNKCEPWDLPKKAKMGEKDWYFFWQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNKNLVGMKKTLVFYRGRAPNGQKTNWVMHEFRLEGPFASYNLPKPAKEEWVVSRVFHKNTAEKLIPTIPSELFRIMKNVNSIGDDDIVDFSSLPPLMDPSNNYDDDQHTNTNNNNNYINNLLASTSSSDYNCLLHQQNKKEDNDDDNNLLLIRAKKDMMGIRNNNNSRGLLLYDPPSSSSSEVVAPPLSDLELCLWDDI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151115g00017 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 248 - -
Stsc151115g00017 306 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Stsc151115g00017 306 FunFam NAC domain-containing protein 100-like 21 169 - -
Stsc151115g00017 306 ProSiteProfiles NAC domain profile. 12 165 IPR003441 GO:0003677|GO:0006355
Stsc151115g00017 306 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Stsc151115g00017 306 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151115g00017 Stsc-Chr151115 90221 91872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151115g00017 10 207 NAC Transcription Factor Family AT5G18270 72.637 6.43e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151115g00017 NAM 4.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151115g00017 - - aip:107623055 434.876