Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151115g00015 ATGGTGAATCCAATTACTCAATCTGATAACAACAAGTGCCCCATTTGTGACACACAGTTTGCTGACATAATCATGGGTAACATAAGAGATAATCAAACTGATGATTATGCCATTGATTTAAGGTTTACTTGGATGTTCTCACTTTATGCCCCAATTTTTCTAGGCTTGATGGGTGCAATTAGCCCTTTTATCACCCGCGGCTCAGCCGCCGGCGAAGAAGCCACCGTTGGCAACATCACCGGAGCCGCCGCCGCGGGTGAAGATGATGAGATAGAGAACAATGAATTCATGCATAATAATAATAACATGACAAGGAGAAGAGCATCAAGTTATTATGTAATGCATCTCTTCAGAGGTCTTCATGTTAGGATGGTCTCTGAATCTGAGAGCTTTGATAACAATAGAAACATGGATGCTAACATGGTTGTTATTGATCCATTTACTGATGCAGCCTTGATGATTTTTCGAGTTCCGAACATGAATCATTCAGCAAGTACTAATCAACATGAGAATAATAATAACAATAGAACAATTGGGTCCTTCCATGAGTTTCTGGTGGGATCTGGGTTTGATTTGTTGCTACAACAATTGGCACAGAATGGAGCAAGTGGATATGGAAGTGTTGTGAACCCTCCAACAAAGAAGGCAGCAATAGAAGCATTGCCGAGTGTGATCATCAATGAAGAGATTTTGCAGTGCATGGTTTGTTTGGAGGACATTGAGATTGGGAATGAAGCAAAGGAGATGCCATGTCTCCATAAATTTCATAGTGATTGCATTATGGCATGGCTGAAACCTCATAGTTCATGCCCTGTATGTAGGTTTCAGATGCCCTCTGAGGATTCAACAGGGGAAGCTAATAATTTGGAAATAAGAAATGATGGGAATCAAAATAATAGTGAGCTTGTCACTGCTTCAAGGAGGAATTGGTTTCCAATGCTGCACTCATTTAATAATTTTCTTCCATCTCCATGA 975 0.4051 MVNPITQSDNNKCPICDTQFADIIMGNIRDNQTDDYAIDLRFTWMFSLYAPIFLGLMGAISPFITRGSAAGEEATVGNITGAAAAGEDDEIENNEFMHNNNNMTRRRASSYYVMHLFRGLHVRMVSESESFDNNRNMDANMVVIDPFTDAALMIFRVPNMNHSASTNQHENNNNNRTIGSFHEFLVGSGFDLLLQQLAQNGASGYGSVVNPPTKKAAIEALPSVIINEEILQCMVCLEDIEIGNEAKEMPCLHKFHSDCIMAWLKPHSSCPVCRFQMPSEDSTGEANNLEIRNDGNQNNSELVTASRRNWFPMLHSFNNFLPSP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151115g00015 324 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Stsc151115g00015 324 SMART ring_2 233 273 IPR001841 -
Stsc151115g00015 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 153 278 - -
Stsc151115g00015 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 280 IPR013083 -
Stsc151115g00015 324 FunFam E3 ubiquitin-protein ligase RNF181 203 280 - -
Stsc151115g00015 324 Pfam Ring finger domain 232 274 IPR001841 -
Stsc151115g00015 324 SUPERFAMILY RING/U-box 223 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151115g00015 Stsc-Chr151115 81171 82145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151115g00015 188 297 C3H Transcription Factor Family AT1G26800 42.342 1.71e-22 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151115g00015 - K11982 aip:107621247 427.172