LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151115g00003	ATGTCTGAATCGTTTGAGATCCCACGTGGCCAAGGTCGTGGTGGTGAAGACATTGAGTTAGGAGCATATGGAATGAACTCAGGAGAACTGGGCTTGAACTTTTTCTTCAAAAAGATTCAAGAGCTTGATAAACAATATGCTAAGCTGGATACACTTTTGAGAAAGCTCCAGGATGCCCATGAGGAGTCAAGATCTGTGACCAAGGCTCCTGACATGAAGGCTATTAAAGAGAGAATGGAGAAAGATGTTGATGAAGTTAAAAAAACTGGATATTACATAAAGACAAAAATTGAAGAACTGGACCAAGAGAATTTGGCAAACAGGCAGAAACCTGGGTGTGGAAAAGGATCAGGTGTTGACCGATCACGAACAGCAACAACTATTAACTTGAAAAAGAAACTAAAGGACAAGATGGCTGAATTTCAGACCCTTAGAGAAGCCATTCATCAAGAACACCGTGAAGTTGTTGAGAGACGTGTGTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGTGATAGTGAGCAAATTTTCCGGAAGGCAATTCAGGAACAAGGAAGAGGACAGATAGTGGACACTCTAGCAGAAATTCATGAGCGCCATGAAGCAGCTAGAGATGTTGAGAAGAAGCTTGTTGAATTACAACAGATATTTATGGATATGGCAGTATTAGTCGATGCACAAGGTGATATGCTTAACAACATAGAAACACAGGTTTTAAGTGCAGTAGATCACGTGCAACAGGGCAACACAGCCCTCCATAAGGCAAAGAAACTTCAAAGGAAATCTAGAAAATGGATGTGCATTGCAATCTTAATATTTCTCATCATTGTTATAATCATTGTTTCCAGTGTCATCAAACCATGGCTTGCCAAAAAGCAGGGTGTTTAA	915	0.4055	MSESFEIPRGQGRGGEDIELGAYGMNSGELGLNFFFKKIQELDKQYAKLDTLLRKLQDAHEESRSVTKAPDMKAIKERMEKDVDEVKKTGYYIKTKIEELDQENLANRQKPGCGKGSGVDRSRTATTINLKKKLKDKMAEFQTLREAIHQEHREVVERRVFTVTGTRADEETIDRLIETGDSEQIFRKAIQEQGRGQIVDTLAEIHERHEAARDVEKKLVELQQIFMDMAVLVDAQGDMLNNIETQVLSAVDHVQQGNTALHKAKKLQRKSRKWMCIAILIFLIIVIIIVSSVIKPWLAKKQGV	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151115g00003	304	CDD	SynN	35	189	IPR006011	GO:0016020
	Stsc151115g00003	304	FunFam	Syntaxin 132	195	295	-	-
	Stsc151115g00003	304	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	202	264	IPR000727	-
	Stsc151115g00003	304	Pfam	SNARE domain	238	290	IPR000727	-
	Stsc151115g00003	304	Gene3D	-	195	295	-	-
	Stsc151115g00003	304	CDD	SNARE_syntaxin1-like	201	263	-	-
	Stsc151115g00003	304	Coils	Coil	131	151	-	-
	Stsc151115g00003	304	ProSitePatterns	Syntaxin / epimorphin family signature.	208	248	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Stsc151115g00003	304	Gene3D	-	31	156	-	-
	Stsc151115g00003	304	SUPERFAMILY	t-snare proteins	31	257	IPR010989	GO:0016020\|GO:0016192
	Stsc151115g00003	304	SMART	SynN_4	27	153	IPR006011	GO:0016020
	Stsc151115g00003	304	FunFam	Syntaxin 132	27	156	-	-
	Stsc151115g00003	304	Pfam	Syntaxin	35	237	IPR006011	GO:0016020
	Stsc151115g00003	304	PANTHER	SYNTAXIN	38	284	IPR045242	-
	Stsc151115g00003	304	SMART	tSNARE_6	197	264	IPR000727	-
	Stsc151115g00003	304	Coils	Coil	39	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151115g00003	Stsc-Chr151115	26093	31508	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151115g00003	17	300	SNARE and Associated Proteins	AT3G03800	72.887	2.00e-141	399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151115g00003	K08486		-	gmx:100306329	477.248