Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151114g00018 ATGATGGCAACCCTCTTCAGAAAACTCTGCGTCTGCGAAACGACGTCGTCCAACTCCAACAACCACCAATCCTCCTCTTCTTGTTCTTGGTTGGAATCACTCCCAAGCGAGATTGTGATTCAGATCGTTCGCTTATTGGACCCAAAGCAGGCCGCGCAGCTCAGCGTGCTTAGCAGAAAGTGGCGATCCATAATCTCCGATAACCAACTGTGGGCCCACTTTCTTGAGGCCCACGATCCTCAGCCTTGGGACTCCCTTCTCTTCTCTGAGACTTTCTTGTCCGATGCTTACCCTCTTCCTCTTCCAAGCTCAGTTGCTCAGATGCAATCTGTGTCATTCAAGAAAGTTTATGGCCAGCGTGCAAGGCTGCCTTGTTCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAATATGGTTGGAGCACACTCTCAACTCCATCGTGGCGATCGGCGACCTTTCTGCAGGAATTCGGTAACGTGGAATCGCCGATATACACTAGACTCCGACACTTCTTTTGGACTATTTATAGCAGGATGCAGACGAAACCGAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGCCACTATGATGATACTGAATCGGCCAAAGCGTCGAGGCGGCAGCTTAAGGAAGCAATCTATACTGCCCTGTTTGACATGAATGTTCCTGCCGTTTGTGCTCTAAATCAGGCAGTTCTAGCTCTTTATGCTGCCAAACAAACTTCTGGAATAGTCGTGAATATAGGTTTTCAAGTCACATCTGTTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGTTGGGAGCACTAAAGCTCACTGGATTCCTTAGAGAACAAATGCAACTGAATAACATGAATTTCGATTCTATGTACACTGTTCGTTTGCTGAAAGAGAAGCTATGCTATGTTGCTATTGATTATGAAGCAGAGCTGTCTAAAGATACACACGCATCATTTGAAGCAGCAGGAGAAGGATTGTTTATACTTAAAAAAGAGCGCTTTCAAACCGGAGAGATCTTATTCCAGCCACGTCTTGCCGGGGTGCGAGCAATGGGTTTGCACCAGGCCGTCGCTCTGTGTATGGACCATTGCCATTCCGCTGAACTATCGGAGGACACGAATTGGTTTAAGACCGTCGTCTTATGCGGGGGCAGTGCATGTTTACCAGGTTTGGCAGAAAGATTAGAGAAAGAACTTCATGGCTTGCTTGATCCCGATGTGTCGGACGGAATCACAGTCGTACCTCCTCCGTATGGCGCGGATACTGCATGGTTTGGAGCAAAGATGATTGGCAATTTAAGTACCTTTCCTGGTCCTTGGTGTATAACGAAGAAGCAGTTCCGTCAAAAGCATAAAACTAATCGGATATGGTGA 1398 0.4671 MMATLFRKLCVCETTSSNSNNHQSSSSCSWLESLPSEIVIQIVRLLDPKQAAQLSVLSRKWRSIISDNQLWAHFLEAHDPQPWDSLLFSETFLSDAYPLPLPSSVAQMQSVSFKKVYGQRARLPCSVIIDGGSGYCKYGWSTLSTPSWRSATFLQEFGNVESPIYTRLRHFFWTIYSRMQTKPSSQPVVVSIPICHYDDTESAKASRRQLKEAIYTALFDMNVPAVCALNQAVLALYAAKQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQLNNMNFDSMYTVRLLKEKLCYVAIDYEAELSKDTHASFEAAGEGLFILKKERFQTGEILFQPRLAGVRAMGLHQAVALCMDHCHSAELSEDTNWFKTVVLCGGSACLPGLAERLEKELHGLLDPDVSDGITVVPPPYGADTAWFGAKMIGNLSTFPGPWCITKKQFRQKHKTNRIW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151114g00018 465 CDD NBD_sugar-kinase_HSP70_actin 127 272 - -
Stsc151114g00018 465 Pfam F-box-like 32 73 IPR001810 GO:0005515
Stsc151114g00018 465 Pfam Actin 175 456 IPR004000 -
Stsc151114g00018 465 Gene3D - 232 430 - -
Stsc151114g00018 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Stsc151114g00018 465 SUPERFAMILY Actin-like ATPase domain 127 247 IPR043129 -
Stsc151114g00018 465 Gene3D Actin; Chain A, domain 4 275 358 - -
Stsc151114g00018 465 SUPERFAMILY F-box domain 20 120 IPR036047 GO:0005515
Stsc151114g00018 465 SUPERFAMILY Actin-like ATPase domain 242 456 IPR043129 -
Stsc151114g00018 465 ProSiteProfiles F-box domain profile. 28 74 IPR001810 GO:0005515
Stsc151114g00018 465 Gene3D - 7 97 - -
Stsc151114g00018 465 Gene3D - 127 459 - -
Stsc151114g00018 465 SMART actin_3 124 463 IPR004000 -
Stsc151114g00018 465 PANTHER ACTIN 172 459 IPR004000 -
Stsc151114g00018 465 SMART fbox_2 34 74 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151114g00018 Stsc-Chr151114 102219 106372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151114g00018 174 457 Cytoskeleton Gene Families AT3G12110 30.034 4.89e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151114g00018 K16616 - gmx:100804254 657.521