Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151114g00011 ATGGCGGAAGAGAGGTTCACTGGCGTTGTTCAGTGGTTCAACAACACCAAGGGCTTCGGCTTCATCAAGCCCGACGATGGCGGCGAAGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGTTACCGCACTCTCCACGAAGGCGATCGCGTTCAGTTCTCCATCGCCACCGGCGACAACCACAAGACAAAGGCCGTTGATGTAACTGCTCCCGACGGCAATCCTCTACACTCTCGTCCCAAGGAATCCGGCGGATCCGGATTTGGCGCTGGATGGAGGCGAAACGGCGGCGCCGCTGGCGGTGGTGCTGGATCAGGTGGTGCCGGGTGCTACCACTGCGGCGATCTCGGACACCTCGCTAGGGATTGCAACCGGAGCAATAGTTCTGGTGGTGCTGGTGGCGGTAGCGGTGGTGCATGTTTTAATTGCGGCGGATTTGGCCATCTCGCTAGGGATTGCTTACGAGGAAGCGGTGGCGGTAACGGTAATGGTCACGGTCACGGCGGCGGAGGTGGTGGTGGAGGTGTTGGTGGTGTTTCGTGCTTTAGATGCGGTGGATTTGGTCACATGGCGAGGGACTGTGCTACAGCAAGGGGAACTGGCGGCGGTGCAGGTGGCGGCGGAGGCGGCGGCGGCGGTGGTTGCTATAGGTGCGGTGAAGTTGGCCACTTGGCTAGGGATTGCAGCAATGAAGGTGGAAGGTACGGTGGCGGCAGCGGCGGTGGTGGCAATGGTAATGGTTCTAGAACCACTTGCTTCAATTGTGGTAAGCCTGGGCATTTTGCAAGGGAGTGCGTTGAAGCCTCTGGTTAA 816 0.5919 MAEERFTGVVQWFNNTKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLHEGDRVQFSIATGDNHKTKAVDVTAPDGNPLHSRPKESGGSGFGAGWRRNGGAAGGGAGSGGAGCYHCGDLGHLARDCNRSNSSGGAGGGSGGACFNCGGFGHLARDCLRGSGGGNGNGHGHGGGGGGGGVGGVSCFRCGGFGHMARDCATARGTGGGAGGGGGGGGGGCYRCGEVGHLARDCSNEGGRYGGGSGGGGNGNGSRTTCFNCGKPGHFARECVEASG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151114g00011 271 ProSiteProfiles Zinc finger CCHC-type profile. 141 154 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 MobiDBLite consensus disorder prediction 66 90 - -
Stsc151114g00011 271 ProSiteProfiles Zinc finger CCHC-type profile. 111 124 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Stsc151114g00011 271 Gene3D - 173 241 - -
Stsc151114g00011 271 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Stsc151114g00011 271 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Stsc151114g00011 271 PRINTS Eggshell protein signature 205 215 - -
Stsc151114g00011 271 PRINTS Eggshell protein signature 97 108 - -
Stsc151114g00011 271 PRINTS Eggshell protein signature 237 255 - -
Stsc151114g00011 271 PRINTS Eggshell protein signature 175 190 - -
Stsc151114g00011 271 SUPERFAMILY Retrovirus zinc finger-like domains 235 267 IPR036875 GO:0003676|GO:0008270
Stsc151114g00011 271 SMART c2hcfinal6 215 231 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 SMART c2hcfinal6 110 126 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 SMART c2hcfinal6 252 268 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 SMART csp_8 7 72 IPR011129 GO:0003676
Stsc151114g00011 271 PANTHER COLD SHOCK DOMAIN PROTEIN 2 199 268 - -
Stsc151114g00011 271 Gene3D - 244 271 - -
Stsc151114g00011 271 ProSiteProfiles Zinc finger CCHC-type profile. 216 231 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Pfam Zinc knuckle 215 230 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Pfam Zinc knuckle 181 196 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Pfam Zinc knuckle 140 154 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Pfam Zinc knuckle 110 124 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Pfam Zinc knuckle 252 266 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Gene3D - 1 83 IPR012340 -
Stsc151114g00011 271 SUPERFAMILY Retrovirus zinc finger-like domains 172 232 IPR036875 GO:0003676|GO:0008270
Stsc151114g00011 271 ProSiteProfiles Zinc finger CCHC-type profile. 253 266 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Gene3D - 106 165 - -
Stsc151114g00011 271 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Stsc151114g00011 271 ProSiteProfiles Zinc finger CCHC-type profile. 182 195 IPR001878 GO:0003676|GO:0008270
Stsc151114g00011 271 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Stsc151114g00011 271 SUPERFAMILY Retrovirus zinc finger-like domains 105 156 IPR036875 GO:0003676|GO:0008270
Stsc151114g00011 271 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Stsc151114g00011 271 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Stsc151114g00011 271 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151114g00011 Stsc-Chr151114 57805 59026 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc151114g00011 CSD 2.3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151114g00011 K09250 - gmx:100806783 313.538