Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151113g00007 ATGACCATGGGCAAGAAGCGGAAGGTCGCACCAAAATCATCTCAAACCGTTGAGCCCCCCGCCAAGCAGCACCAACCTGAGCCACAACAGGAAGAATACGAAGAGGTTGAGGAAGAAGTAGAAGAGGAGGTCGAAGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAAGAACAAGAAGAAGGAGGTAACGAACAAAACCAACAACAACAACTGGATGAAGACGACGACCCCATCCCGAAGCTTCTAGAACCTTTTGGTAAGGACCAGATCTTGAATCTTCTCTGCGAAGCTGCCGCCAAACACCGCGACGTCGCCGACCGGATCCGCCGTATCGCCGACGAAGACGCTGTCCACCGGAAAATATTCGTCCACGGCCTCGGCTGGGACACCACCGCCGAAACCCTAATCAGCGCGTTCAGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGATAAGATCTCCGGCAAGTCCNNNNNNNNNNTCAAGAACCGCCGCGGCGCCCGGAATGCCCTCAAGCAGCCGCAGAAGAAGATCGGTAACCGCATGACGGCGTGCCAGCTGGCATCTATTGGCCCTGTCCAGCAGTCAGCACAGCAGCCTGCTGCCGCTGCCGCCTCTTCGGGGCCGGCTGTCTCCGAATATACACAGAGAAAGATCTACGTGAGCAACGTTGGGTCCGATTTGGACCCGCATAAGCTGATGGCGTTCTTCTCGAGGTTTGGTGAGATCGAGGAAGGGCCGCTGGGGCTGGACAAGGTTACCGGGAAGCCAAAGGGGTTCTGTTTGTTCGTCTACAAGAGCGTTGAGAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACACGTGTTGCATTGCCAGAAGGCCATTGATGGACCCAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACTCAGGGTTTGGTGCTGGTGTTGGTGGTGGGGTTGGTAACAATGTGCAGGGGCATATGATGACGCCTGCCAATGCCGCAGCCGCTCCTATGGGTGTGAACCAAGCTGCTGTACCACCGCTGAATCCAGCGCTCGGGCAGGCATTGACAGCCCTGCTTACTCAACAGGGTGCTTCATTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGCCGTTCCGGCTGCAGCGGCACACACGATACAGGGTGGTTACAGCGCTCAGCAGAGTATAAGCCCTGGTGTTATGAGCGCGTACGGGAATCAGGTAGGGCTGCAGGCGGCTTATCCGAACCAGCAGGTCGGGCAGGGTGGGAGCTCTGGAAGAGGGCAACCTGGCGTTGGGCAGTATGGTGGTGTTGCTCCTTACATGGGCCACTAG 1410 0.5631 MTMGKKRKVAPKSSQTVEPPAKQHQPEPQQEEYEEVEEEVEEEVEEEEEEEEEEEEEEEEEEQEEGGNEQNQQQQLDEDDDPIPKLLEPFGKDQILNLLCEAAAKHRDVADRIRRIADEDAVHRKIFVHGLGWDTTAETLISAFSQYGEIEDCKAVTDKISGKSXXXXKNRRGARNALKQPQKKIGNRMTACQLASIGPVQQSAQQPAAAAASSGPAVSEYTQRKIYVSNVGSDLDPHKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVESAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNSGFGAGVGGGVGNNVQGHMMTPANAAAAPMGVNQAAVPPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSAVPAAAAHTIQGGYSAQQSISPGVMSAYGNQVGLQAAYPNQQVGQGGSSGRGQPGVGQYGGVAPYMGH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151113g00007 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 307 IPR000504 GO:0003723
Stsc151113g00007 469 SMART rrm1_1 125 193 IPR000504 GO:0003723
Stsc151113g00007 469 SMART rrm1_1 225 297 IPR000504 GO:0003723
Stsc151113g00007 469 MobiDBLite consensus disorder prediction 440 461 - -
Stsc151113g00007 469 SUPERFAMILY RNA-binding domain, RBD 124 201 IPR035979 GO:0003676
Stsc151113g00007 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 197 IPR000504 GO:0003723
Stsc151113g00007 469 Gene3D - 23 202 IPR012677 -
Stsc151113g00007 469 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 33 313 - -
Stsc151113g00007 469 Gene3D - 203 314 IPR012677 -
Stsc151113g00007 469 SUPERFAMILY RNA-binding domain, RBD 210 324 IPR035979 GO:0003676
Stsc151113g00007 469 MobiDBLite consensus disorder prediction 31 67 - -
Stsc151113g00007 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 179 IPR000504 GO:0003723
Stsc151113g00007 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 295 IPR000504 GO:0003723
Stsc151113g00007 469 Coils Coil 30 72 - -
Stsc151113g00007 469 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151113g00007 Stsc-Chr151113 64917 67622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151113g00007 223 303 C2H2 Transcription Factor Family AT2G19380 34.568 3.45e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151113g00007 K12741 - gmx:100784200 485.337