Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151113g00005 ATGTATCACGCGAAGAAGTTCTCGTCGGCAGCGATGGTGCCGCATAAACCTCAAGGCGGTGGCGAACAAGTTGCAAGTGTTGGAGTTTTGGATGGATCCGCGATGAGGAATGCGGGACCAGCTAGTTCTGGTGGAAGTGGGAAGCAGCGTTTGCGATGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTAAGAGTGATGGGTGTACCTGGACTTACTATTTATCATGTTAAAAGCCATTTACAGAAATATCGTCTTGCAAAGTACTTGCCTGAGTCTCCAGCTGATGGTAAAGACTCTAAAGATGAGAAAAGGACATCTGGAGATAGTGTTGCTGGCATAGATTCTTCCCAGGGGTTGCAAATCAATGACGCTCTAAGAATGCAGATGGAGGTTCAGAAACGTCTTCATGAACAGCTTGAGGTGCAAAAGCAGTTACAAATGAGAATTGAAGCGCAGGGGAAATACTTGCAGAAGATCATAGAGGAACAACAGAAATTAGGTAGTAGCTTGACAACTTCAGACACATTGCCATCGTCCCATGATAAGCAAAACAATCCCCAGTCAGAGCCTTCCGGATCGAGCGATGTCATTGCAGATGCTATGTCTCCACTTAAAAAACAGAGAACCGAAGATGGTTCAAAAGATGGCTTTGCTGCTTCTCAGGTGACAACAAAGACTTCACAAAAGACTGATTGTAGTGCTGATCAGTTGGACTCGTATGAAAATGAGGATCGGTTTGGATTAAATTCGGAGACCAAAAAGGATGAAGATAAAGAAAGTGAGAAGTAA 840 0.444 MYHAKKFSSAAMVPHKPQGGGEQVASVGVLDGSAMRNAGPASSGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRTSGDSVAGIDSSQGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSSLTTSDTLPSSHDKQNNPQSEPSGSSDVIADAMSPLKKQRTEDGSKDGFAASQVTTKTSQKTDCSADQLDSYENEDRFGLNSETKKDEDKESEK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151113g00005 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 47 271 IPR044848 GO:0003700
Stsc151113g00005 279 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 183 212 - -
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 1 22 - -
Stsc151113g00005 279 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 253 279 - -
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 183 279 - -
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 107 134 - -
Stsc151113g00005 279 SUPERFAMILY Homeodomain-like 47 102 IPR009057 -
Stsc151113g00005 279 Coils Coil 139 159 - -
Stsc151113g00005 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 108 125 - -
Stsc151113g00005 279 Pfam Myb-like DNA-binding domain 51 101 IPR001005 -
Stsc151113g00005 279 FunFam Myb family transcription factor 47 105 - -
Stsc151113g00005 279 MobiDBLite consensus disorder prediction 231 252 - -
Stsc151113g00005 279 Gene3D - 47 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151113g00005 Stsc-Chr151113 38807 42986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151113g00005 42 180 G2-like Transcription Factor Family AT4G28610 58.273 1.73e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151113g00005 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151113g00005 - - adu:107494193 470.7