Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151112g00006 ATGACTGAAGTACTCCACAATCCAGAGGTTATGTTTAAAGCCAAGCAAGAATTAGATCAAAACATTGGAAGAGGTAACCCTATTCATGAGTCAGATATTCCAAAACTGCCATACTTACAAGCAATAGTAAAAGAGAGTTTACGATTATACCCTCCAGCTCCAGTCTTGTTCCCAAAAAAATCTAAGGAAGATGTGGAAATCTCAGGTTATAGGATCCCAAAGGGTGCAAGGGTGCTCATAAATGAATGGGCTATTTGTAGGAACCTTAATGTGTGGGACAATGCCAATTTGTTCTTGCCAGAGAGGTTCTTGGGGTCAAAAATTGAGGTGAAAGGAAGAGATTTTCAGCTGACACCATTTGGAAGTGGAAGAAGAATTTGTCCTGGGTTATCATTAGCTATGAGAATGATTCATGTGATGTTGGGATCATTGATCAACTCTTTTGATTGGAAACTTGGAAATATGAACAAGGATCAACCCCTCAAAGCTATTCCTGTTCCTGTTATAATAAACCATAATTAA 522 0.3831 MTEVLHNPEVMFKAKQELDQNIGRGNPIHESDIPKLPYLQAIVKESLRLYPPAPVLFPKKSKEDVEISGYRIPKGARVLINEWAICRNLNVWDNANLFLPERFLGSKIEVKGRDFQLTPFGSGRRICPGLSLAMRMIHVMLGSLINSFDWKLGNMNKDQPLKAIPVPVIINHN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151112g00006 173 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 Pfam Cytochrome P450 2 155 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Stsc151112g00006 173 Gene3D Cytochrome P450 1 169 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 SUPERFAMILY Cytochrome P450 2 154 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 158 - -
Stsc151112g00006 173 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151112g00006 173 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151112g00006 Stsc-Chr151112 51047 51568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151112g00006 1 166 Cytochrome P450 AT2G45570 51.099 3.55e-62 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151112g00006 - - ahf:112701636 298.516