Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151111g00023 ATGATTGGAGCCTATGGTAACATCATAGGTGAAAGTGTAGAGAAATCAGCAAAGTTCTCATATGAAGAACTAGCCAATGCCACAGATAACTTCAGTTTGGAAAACAAAATTGGTCAAGGTGGTTTTGCAGAAATATATTATGCAGAGCTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGACAAGAAAGCTTCAAAGGAGTTTCTTGCCGAACTGAAAGTGCTGACTCGAGTTCATCATTTAAACCTAGTTCGGTTGATTGGATATTGCGTTAAGGATTCTCTTTTCCTTGTTTATGAATACATTGACAATGGAAACTTAAGCCAACATCTGCAAGATTCAGATAGAAAACCTTTGTCATGGTCTACCCGGATTCAAATAGCCCTGGATTCAGCAAGAGGACTTGAATATATTCATGAACATACTACGCCTTTATACATACATCGCGACATAAAATCAGCAAATATTTTGATAGACAAATTCTTCCATGCAAAGGTGGCAGATTTTGGACTAGCAAAGCTAATTGATGTAGGAAGTTCATCAGTTCCCACTGATAAAATGGCAGGCACATTTGGCTACATGCCACCAGAGTATGTATGTGGCAATGTTTCTCCTAAAGTAGATGTCTATGCTTTTGGAGTTGTTCTTTATGAGCTTATTTCTGCTAAAGAAGCTTTGATCAAGGATGGTGATGAAATTAAGGGCCTTGTAGCTTTGTTTGATGAAGTTTTTGACCAGGAAGATCCAAAAGAAGGTCTTAAAAATATGGTGGATCCTAGGCTTGGAGATAATTACTCAGTTGATTCAGTTTACAAGATGGCACAACTTGCCAAGGCATGTACCGAGGGAGATCCGCAGCGGCGTCCGAAGATGAGATCTGTTGTGCTTGCTCTTGGGGCACTAAATTCAGACACTGAGAATTGGGATTTGCTTCTAAGAAAATACTGCTCTTTTGAATCAATAATGCCTGCAAGATAG 978 0.3916 MIGAYGNIIGESVEKSAKFSYEELANATDNFSLENKIGQGGFAEIYYAELNGEKAAIKKMDKKASKEFLAELKVLTRVHHLNLVRLIGYCVKDSLFLVYEYIDNGNLSQHLQDSDRKPLSWSTRIQIALDSARGLEYIHEHTTPLYIHRDIKSANILIDKFFHAKVADFGLAKLIDVGSSSVPTDKMAGTFGYMPPEYVCGNVSPKVDVYAFGVVLYELISAKEALIKDGDEIKGLVALFDEVFDQEDPKEGLKNMVDPRLGDNYSVDSVYKMAQLAKACTEGDPQRRPKMRSVVLALGALNSDTENWDLLLRKYCSFESIMPAR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151111g00023 325 Gene3D Transferase(Phosphotransferase) domain 1 102 314 - -
Stsc151111g00023 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Stsc151111g00023 325 ProSiteProfiles Protein kinase domain profile. 31 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151111g00023 325 FunFam PTI1-like tyrosine-protein kinase 3 102 311 - -
Stsc151111g00023 325 Pfam Protein tyrosine and serine/threonine kinase 32 296 IPR001245 GO:0004672|GO:0006468
Stsc151111g00023 325 FunFam LysM receptor kinase 2 10 101 - -
Stsc151111g00023 325 SUPERFAMILY Protein kinase-like (PK-like) 15 297 IPR011009 -
Stsc151111g00023 325 Gene3D Phosphorylase Kinase; domain 1 8 101 - -
Stsc151111g00023 325 SMART serkin_6 31 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151111g00023 325 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524
Stsc151111g00023 325 PIRSF ILK 7 315 - -
Stsc151111g00023 325 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 12 310 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151111g00023 Stsc-Chr151111 125310 126951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151111g00023 3 310 Receptor kinase-like Gene Family AT3G21630 66.881 3.13e-145 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc151111g00023 PK_Tyr_Ser-Thr 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151111g00023 - K13429 gmx:100803042 471.855