Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151111g00020 ATGGTGGATGGAGAGTTTCTGGGCCACACATTTCAGTACTCAGTGATTCTTGGTGACAACTACACAGCCATTGCCAAATGGGCTTTTTCAAACTTGGTGACAGTTGAGTGGCTGGAGAACACTAACAGCTATTCGCAATATGCTATTCCGGCCGGCGGAAAGCTTAATGTGACAGTTAACTGTTCTTGTGGAGACAGTAATATTAGCAAAGATTATGGATTGTTCATCACATACCCTCTTAGACCTGAGGATTCTTTGCAGTCAATTGCTAACCAGACAAAGCTTGATCCTGAGTTGTTGATGAAATACAACCCCGGTGTGAATTTCAGCAAAGGGAGTGGTCTTGTTTATATTCCCGGCAGAGGTTCGCTCTTCGATTTTCATGCCATGCTTAGCTTTCCTTTAACCATGAGACAAATTCCTCATATTTTCTTTTCGTTTCACTTTCCAGATGAAAATGGTAACTATGTGCCTCTTCACTCAAGCTCTGGAGGTCTACCAGGTGGGGTTGTTGCTGGAATATCTGTTGGAGTTGTAGCAATAATTCTGTTATTAGCATTTTGTGTTTATATTAAATGTTGGCGAAGGAAGAACGTCCGGAAGAAAATACTGCGATCAGAATATCTCGGTTCGAAAATTGTTCGAGCTAAGGAAGATAAAGCCTCTGAAAGCTCCAGAAACCTAAGTGTAGAAAAATCAGCAGAGTTTTCATATGAAGAACTGGCCCTTGCTACAAATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAAATCTATTATGCAGAGCTGAATGGCAAGTTCTCTCCAACAACACAGAAAGCTGCAATAAAGAAGATGGACATGAAAGCATCAAAAGAATTTCTGGCAGAACTGAAAGTGTTGACACATGTTCATCACTTAAACCTGGTCCATTTGATTGGATATTGTGTTAAGGGCTCCTTTTTCCTTGTTTATGAATACATTGACAACGGAAACTTAAGTGAACATCTAAGAAATTCAGATAGAGAACCATTGCCATGGTCTACCCGGATTCAAATAGCTCTCGATTCGGCCAGGGGACTTGAATATATTCATGAACATACAAAGCCTGTATATATCCATCGTGATGTAAAGTCAGCGAATATCTTATTAGACAAATCCTTTCATGGAAAGGTTGCGGATTTCGGACTGGCAATGCTGATTGATGCTGAAAGTTCATCAGCTCCCACTGCTAATATGGCGGGCACATTCGGTTACATGCCACCAGAGTATGTATATGGCAAAGTTTCTCCTAAACTAGATGTCTTTGCTTTTGGGGTTGTCCTTTATGAGCTAATTTCTGCTAAGGAAGCTGTGACTGTGATCAATGGTGGTGCTGAAATCAAGGGTCTTGTAGCTTTGTTTCGTGAAGTTTTCGATCAGCCAGACCCTAGAGAAGGTCTTAAAGAATTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTACAAGATGGCACAACTTGCCAATGCATGTACAGATGCGGATCCGAAGCAGCGTCCGAAGATGAGATCAGTGGTGGTTGCCCTTATGACACTTGGTTCAAGCACTGAGAATTGGGACATTGCTTCCTTCTATGAAAATCCAGCTCTTGTGAATCTAATGTCTGCTAGATAG 1656 0.413 MVDGEFLGHTFQYSVILGDNYTAIAKWAFSNLVTVEWLENTNSYSQYAIPAGGKLNVTVNCSCGDSNISKDYGLFITYPLRPEDSLQSIANQTKLDPELLMKYNPGVNFSKGSGLVYIPGRGSLFDFHAMLSFPLTMRQIPHIFFSFHFPDENGNYVPLHSSSGGLPGGVVAGISVGVVAIILLLAFCVYIKCWRRKNVRKKILRSEYLGSKIVRAKEDKASESSRNLSVEKSAEFSYEELALATNNFSLANKIGQGGFGEIYYAELNGKFSPTTQKAAIKKMDMKASKEFLAELKVLTHVHHLNLVHLIGYCVKGSFFLVYEYIDNGNLSEHLRNSDREPLPWSTRIQIALDSARGLEYIHEHTKPVYIHRDVKSANILLDKSFHGKVADFGLAMLIDAESSSAPTANMAGTFGYMPPEYVYGKVSPKLDVFAFGVVLYELISAKEAVTVINGGAEIKGLVALFREVFDQPDPREGLKELVDPRLGDNYSIDSVYKMAQLANACTDADPKQRPKMRSVVVALMTLGSSTENWDIASFYENPALVNLMSAR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151111g00020 551 SUPERFAMILY Protein kinase-like (PK-like) 224 523 IPR011009 -
Stsc151111g00020 551 ProSitePatterns Protein kinases ATP-binding region signature. 254 282 IPR017441 GO:0005524
Stsc151111g00020 551 ProSiteProfiles Protein kinase domain profile. 248 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151111g00020 551 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 3 536 IPR044812 GO:0019199|GO:0045087
Stsc151111g00020 551 Gene3D Transferase(Phosphotransferase) domain 1 325 540 - -
Stsc151111g00020 551 FunFam PTI1-like tyrosine-protein kinase 3 325 537 - -
Stsc151111g00020 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Stsc151111g00020 551 Gene3D Phosphorylase Kinase; domain 1 218 324 - -
Stsc151111g00020 551 SMART serkin_6 248 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151111g00020 551 FunFam LysM receptor kinase 2 227 324 - -
Stsc151111g00020 551 Pfam Protein tyrosine and serine/threonine kinase 250 522 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151111g00020 Stsc-Chr151111 108456 111137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151111g00020 4 551 Receptor kinase-like Gene Family AT3G21630 53.451 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc151111g00020 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151111g00020 K13429 - gmx:100803042 683.33