Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151111g00009 ATGGCTCAGCATCAGCAAGAACATGTAGTAGTGAGGGATAAGATCATGGCACATCCTCTCTTCCCTCGTCTCTTGTCTTCTTACCTCAATTGCTTGAAGGTTGGAGCACCAGCAGAAGTGGTGGGAAGGTTAGAGGAGTTAAGTTCAAAGTGTGAAACATCATCATCATCAAGAAATAGCAGTAATTATTCATCATCATCATCATGCTTAATAGGTGAAGATCCAGGGCTTGATCAGTTCATGGAGGCATATTGTGAGATGCTAATCAAGTATGAGCAAGAGCTTTCTAAACCCTTCAAAGAAGCCATGCTCTTCTTCTCCACCATTGATTCCCAGCTTAAGGCCCTTTCCCTTTCATCACCATCACCACTTTTTGGTACTCATCAAAGTGAATCATCATCATCATTATTACTACAAAATGAGGAGGGTGTGAACAATAATAGCAAGATGGAAACAAGTCATCAAGGTGAAGAAGAGAGGGAACTGAAGATCCAGCTTCTGAAGAAGTACAGTGGATACATTGGTGGACTGAAGAAGGAATTTCTGAAGAAGAAGAAGAATGGGAAGTTGCCAAAAGAAGCTCGGCAGCAGCTTCTAGAATGGTGGAACAGACATTACAAATGGCCTTATCCTTCGGAGTCACAGAAACAAGCACTAGCAGAATCAACGGGGCTAGATCTGAAGCAGATAAACAATTGGTTCATAAATCAGAGGAAACGCCATTGGAAGCCTTCTGAAGACATGCAATTTGCTGTCATGGATGCAACTAACCACTACATGGAAACCATCTTGTGCAAGCCCTTTCCCATGGATACCATGCCTATCTTATTTTAA 834 0.4209 MAQHQQEHVVVRDKIMAHPLFPRLLSSYLNCLKVGAPAEVVGRLEELSSKCETSSSSRNSSNYSSSSSCLIGEDPGLDQFMEAYCEMLIKYEQELSKPFKEAMLFFSTIDSQLKALSLSSPSPLFGTHQSESSSSLLLQNEEGVNNNSKMETSHQGEEERELKIQLLKKYSGYIGGLKKEFLKKKKNGKLPKEARQQLLEWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMETILCKPFPMDTMPILF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151111g00009 277 Pfam ELK domain 161 182 IPR005539 GO:0003677
Stsc151111g00009 277 ProSiteProfiles 'Homeobox' domain profile. 181 244 IPR001356 GO:0003677
Stsc151111g00009 277 Gene3D - 179 253 - -
Stsc151111g00009 277 SMART ELK_2 161 182 IPR005539 GO:0003677
Stsc151111g00009 277 SMART HOX_1 183 248 IPR001356 GO:0003677
Stsc151111g00009 277 ProSitePatterns 'Homeobox' domain signature. 219 242 IPR017970 GO:0000981|GO:0006355
Stsc151111g00009 277 CDD homeodomain 193 245 IPR001356 GO:0003677
Stsc151111g00009 277 Pfam Homeobox KN domain 201 240 IPR008422 GO:0003677|GO:0006355
Stsc151111g00009 277 Pfam KNOX1 domain 11 51 IPR005540 GO:0003677|GO:0005634
Stsc151111g00009 277 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 60 251 - -
Stsc151111g00009 277 Pfam KNOX2 domain 71 116 IPR005541 GO:0003677|GO:0005634
Stsc151111g00009 277 SUPERFAMILY Homeodomain-like 183 255 IPR009057 -
Stsc151111g00009 277 ProSiteProfiles ELK domain profile. 161 181 IPR005539 GO:0003677
Stsc151111g00009 277 SMART KNOX2_2 67 118 IPR005541 GO:0003677|GO:0005634
Stsc151111g00009 277 SMART KNOX1_2 9 53 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151111g00009 Stsc-Chr151111 37201 39814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151111g00009 11 273 Homeobox Transcription Factor Family AT1G62360 62.406 4.41e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc151111g00009 KNOX2 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151111g00009 - - ahf:112702242 407.912