Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151111g00008 ATGGCACATCCTCTCTTCCCTCGTCTCTTGTCTTCTTACCTCAATTGCTTGAAGGTTGGAGCACCAGCAGAAGTGGTGGGAAGGTTAGAGGAGTTAAGTTCAAAGTGTGAAACATCATCATCATCAAGAAATAGCAGTAATTATTCATCATCATCATCATGCTTAATAGGTGAAGATCCAGGGCTTGATCAGTTCATGGAGGCATATTGTGAGATGCTAATCAAGTATGAGCAAGAGCTTTCTAAACCCTTCAAAGAAGCCATGCTCTTCTTCTCCACCATTGATTCCCAGCTTAAGGCCCTTTCCCTTTCATCACCATCACCACTTTTTGGTACTCATCAAAGTGAATCATCATCATCATTATTACTACAAAATGAGGAGGGTGTGAACAATAATAGCAAGATGGAAACAAGTCATCAAGGTGAAGAAGAGAGGGAACTGAAGATCCAGCTTCTGAAGAAGTACAGTGGATACATTGGTGGACTGAAGAAGGAATTTCTGAAGAAGAAGAAGAATGGGAAGTTGCCAAAAGAAGCTCGGCAGCAGCTTCTAGAATGGTGGAACAGACATTACAAATGGCCTTATCCTTCGGAGTCACAGAAACAAGCACTAGCAGAATCAACGGGGCTAGATCTGAAGCAGATAAACAATTGGTTCATAAATCAGAGGAAACGCCATTGGAAGCCTTCTGAAGACATGCAATTTGCTGTCATGGATGCAACTAACCACTACATGGAAACCATCTTGTGCAAGCCCTTTCCCATGGATACCATGCCTATCTTATTTTAA 789 0.4195 MAHPLFPRLLSSYLNCLKVGAPAEVVGRLEELSSKCETSSSSRNSSNYSSSSSCLIGEDPGLDQFMEAYCEMLIKYEQELSKPFKEAMLFFSTIDSQLKALSLSSPSPLFGTHQSESSSSLLLQNEEGVNNNSKMETSHQGEEERELKIQLLKKYSGYIGGLKKEFLKKKKNGKLPKEARQQLLEWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMETILCKPFPMDTMPILF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151111g00008 262 CDD homeodomain 178 230 IPR001356 GO:0003677
Stsc151111g00008 262 Pfam Homeobox KN domain 186 225 IPR008422 GO:0003677|GO:0006355
Stsc151111g00008 262 Pfam ELK domain 146 167 IPR005539 GO:0003677
Stsc151111g00008 262 ProSitePatterns 'Homeobox' domain signature. 204 227 IPR017970 GO:0000981|GO:0006355
Stsc151111g00008 262 SMART KNOX2_2 52 103 IPR005541 GO:0003677|GO:0005634
Stsc151111g00008 262 SMART ELK_2 146 167 IPR005539 GO:0003677
Stsc151111g00008 262 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 236 - -
Stsc151111g00008 262 ProSiteProfiles ELK domain profile. 146 166 IPR005539 GO:0003677
Stsc151111g00008 262 SMART HOX_1 168 233 IPR001356 GO:0003677
Stsc151111g00008 262 Pfam KNOX2 domain 56 101 IPR005541 GO:0003677|GO:0005634
Stsc151111g00008 262 Gene3D - 164 238 - -
Stsc151111g00008 262 SUPERFAMILY Homeodomain-like 168 240 IPR009057 -
Stsc151111g00008 262 ProSiteProfiles 'Homeobox' domain profile. 166 229 IPR001356 GO:0003677
Stsc151111g00008 262 Pfam KNOX1 domain 1 36 IPR005540 GO:0003677|GO:0005634
Stsc151111g00008 262 SMART KNOX1_2 1 38 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151111g00008 Stsc-Chr151111 37201 40106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151111g00008 1 258 Homeobox Transcription Factor Family AT1G62360 62.452 4.62e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc151111g00008 KNOX2 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151111g00008 - - ahf:112702242 397.897