Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151110g00012 ATGGCTTCATCTTCCTCTGATCCCGGCAAGTCAGACGCCGGAGGCGGCGGTGCGGAGACTTCGGAGGCGGTGGTGACAGCTGCGAACGATCAGCTTCTGCTGTACAGGGGACTCAAGAAGGCGAAGAAGGAGAGAGGCTGCACCGCCAAAGAGCGTATCAGCAAGATGCCACCGTGCGCCGCCGGCAAACGCAGTTCCATATATCGCGGCGTTACAAGGCATAGATGGACGGGTCGTTATGAGGCACATCTTTGGGATAAGAGTACGTGGAACCAGAATCAGAATAAGAAAGGGAAGCAAGTTTACTTGGGAGCTTATGATGACGAGGAGGCAGCTGCTAGAGCATACGATCTTGCTGCTTTGAAATACTGGGGTCCAGGAACGCTTATTAACTTCCCAGTGACTGATTATAAAAGAGATCTTGATGAAATGCAAAATGTTTCCAGGGAGGATTACCTTGCCTCTTTGCGTAGGAAGAGCAGTGGTTTTTCAAGAGGAATATCAAAATATCGTGCACTCTCCAGTCGATGGGAGCCATCATATGGTCGTATAGCAGGATCGGATTACTTCAATAGCATGCATTATGGTGATGATTCAGCAGCAGAAAGTGATTACATGAGTGGTTTCTGTATAGAAAGAAAGATTGATTTAACTAGTCACATCAAGTGGTGGGCATCTAATAAAAATCGACAACCTGATAGTGGGACAAGATTATCAGAGGAAAAGAAACATGGATTTGCTGGAGATGTTTGTAGTGAACTTAGAACACTAGAGCAGAAAGTCCAACCTACTGAACCATACCAAATGCCAGAATTAGGTCAGCCCCACAATGAGAAAAAACATAAAAGTTCTTCAGGATCTGCCTTAAGTATTCTCTCACAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCAGCCAAGAGACAAGAGAATAGTACAGAAAATGATGAGAACGAAAACAAGAATATAGTCAATAAGTTGGATCATGGCAAAGCAGTTGAGAAATTATCAAATCAGGAGGGTGGAAATGACCGACTTGACATTGCAATGGGAATGAGCGGAGCATTGTCACTTCAGAGAAATGTTTACCCGTTGACTCCATTCTTGTCTGTGGATCAATTGGGAGATCCCGTTCTTTGGACATCTATTGTTCCCATACTTCCAGCTGGCATGATTCCTCGTACAACGGAGGCTACCAAGACCGAGACCAGTTCAACGTACACTATGTTTCAGCCAGAGGAGTGA 1245 0.453 MASSSSDPGKSDAGGGGAETSEAVVTAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYKRDLDEMQNVSREDYLASLRRKSSGFSRGISKYRALSSRWEPSYGRIAGSDYFNSMHYGDDSAAESDYMSGFCIERKIDLTSHIKWWASNKNRQPDSGTRLSEEKKHGFAGDVCSELRTLEQKVQPTEPYQMPELGQPHNEKKHKSSSGSALSILSQSAAYKSLQEKAAKRQENSTENDENENKNIVNKLDHGKAVEKLSNQEGGNDRLDIAMGMSGALSLQRNVYPLTPFLSVDQLGDPVLWTSIVPILPAGMIPRTTEATKTETSSTYTMFQPEE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151110g00012 414 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Stsc151110g00012 414 FunFam AP2-like ethylene-responsive transcription factor 66 135 - -
Stsc151110g00012 414 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Stsc151110g00012 414 MobiDBLite consensus disorder prediction 303 323 - -
Stsc151110g00012 414 MobiDBLite consensus disorder prediction 300 323 - -
Stsc151110g00012 414 MobiDBLite consensus disorder prediction 1 22 - -
Stsc151110g00012 414 Pfam AP2 domain 67 125 IPR001471 GO:0003700|GO:0006355
Stsc151110g00012 414 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Stsc151110g00012 414 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Stsc151110g00012 414 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 28 306 - -
Stsc151110g00012 414 MobiDBLite consensus disorder prediction 261 287 - -
Stsc151110g00012 414 SUPERFAMILY DNA-binding domain 66 134 IPR016177 GO:0003677
Stsc151110g00012 414 Gene3D AP2/ERF domain 67 135 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151110g00012 Stsc-Chr151110 67890 71141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151110g00012 25 410 AP2-EREBP Transcription Factor Family AT2G41710 60.817 1.59e-155 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151110g00012 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151110g00012 K09285 - gmx:100814117 674.085