Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151110g00010 ATGGGAACTGCCTCTAGGCAGTTGAAGGTCATGCTTCGCAAGAACTGGCTCCTCAAAATTCGTCATCCTTTCGTTACTGCGGCTGAGATATTGCTCCCTACGGTTGTGTTGTTGCTGTTAGTGGCTGTAAGGACGCAAGTTGACACTCAAATTCATCCGGCTGAACCGCACATTCAGAAAGAGATGTTTGTGGAGGTGGGTAAAGGTATATCCCCTAACTTCCTACAAGTTTTGGAATCCTTGTGGGAGAAAGGAGAGTATTTAGCTTTTGCACCAGATACTGATGAGACGAAGCTGATGATTGATGTAGTGTCCATAAAATTCCCACTCTTGAAGCTTGTTAGTCGAGTGTACAAAGATGAGGTAGAGTTGGAAAATTACATTCGCTCAGATGCTTATGGTACCTGCAGTGAAGCAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCTATTGTATTTTATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCATTCTCCGGTTTCCCAGATGTAAAAACAATAATGGATACAAATGGTGCATTTCTTAACGACTTGGAACTGGGTGTTAGTGCTGTGCCAACAATGCAGTACAGCTTCAGTGGGTTTTTTACTCTCCAGCAAATGGTTGATTCATTTATAATATTCATTGCTCAACAGTCTGACATAAATTCCAGCGCTGAACGTGTAAAGCTTCCTCTATCAGGCTTCTATGACACTGATTTCTCTCTGAATACTACATGGACTCAGTTTAATCCTGCTCAGATACGTGTAGCTCCATTTCCTACTCGAGAGTACACCGATGATCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTATACCTATTGGGTTTTCTCTATCCAGTTTCACGCCTCATCAGTTATTCTGTTTTTGAAAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGCCTGAAAGATGGGATATTTCATCTCTCTTGGTTTATTACATATGCTTTGCAGTTTGCAATATCTTCCGGGATCATTACTGCTTGCACCATGGATAATTTATTCAAGTATAGTGATAAAACATTGGTGTTTGCCTACTTTTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCGACATTTTTCAAACGGGCTAAAACAGCTGTTGCGGTTGGAACACTGTCCTTTCTTGCCTTCGCTCTTGGGTCAGTTAACTTTGCTGATTATGAGCGTGCTCATGTGGGACTACGCTGGACCAACATATGGCGGGAATCCTCAGGAGTGAATTTTTCCCTATGTCTTTTGATGATGATACTTGATACACTGCTATATTGTGTAATAGGTCTATATTTTGACAAGGTTCTTCCGCGGGAGTATGGACGGCGCTATCCGTGGTCTTTTGTTTTCCGAAGAGACTTTTGGAGAAAGAAAAAAACTGGAAAACACTGCCTGCCCAATTTTGAAGTTAAAATTGCTGGTAGGAATTCCGAGTCAGATATAAATTTATTAGGGAAAGATACTTTTGAACCTTCTATAGAAGCAATAAGCCTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTACATAAAGTGTATGCTACTAAAAAGGGAGATTGCTGTGCTGTTAACTCCTTACAACTTACATTGTATGAACATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGTACGACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACATCAGGGGATGCTTTGGTGTTTGGAAAGAACATCGTGTCAGATCTTGATGAGATACGGAAGGTTTTGGGTGTGTGCCCACAACATGATATTCTCTTTCCTGAATTGACTGTGAGGGAGCATTTAGAAATATTCGCCATATTAAAGGGTGTCAATGAAGACTCACTGGAGGGTGTTGTTACCAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATTAACAGTGTTGTGAGAGCTCTTTCTGGTGGCATGAAGAGAAAATTGTCTCTTGGAATTGCATTGATTGGGAACAGTAAGGTTATAATTCTTGATGAACCTACCAGCGGAATGGATCCATACTCAATGCGTTTGACTTGGCAGTTAATAAAAAAATTTAAGAAGGGAAGGATAATCTTACTAACAACTCATTCAATGGATGAAGCAGATGAACTAGGTGATCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCACTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACTCTTGTAAAGTCAGCTCCCACTGTTTCTATAGCTAGTGATATAGTATATCGCCATGTTCCCTCAGCAACCTGTGTAAGCGAGGTGGGAACTGAGATTTCCTTTAGGCTTCCACTGGCATCTTCATCAGCTTTTGAGGGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAATCCAGTTTTGAACATGGAAATAAGTGGTAGTGGTAGCAAAGACAGTCTTGGTATTGAAAGCTACGGTATATCTGTCACAACCCTAGAGGAGGTATTTTTGAGAGTTGCAGGATGTGACTATGATGGAGTTGAACACTTTGAAGAAAATGACCATTCCCATGTGCCTGACTCTGTGGCTTTGCTTGGTTCTTGTGACCATCCATCTACCAAAAAATGTTTTTTGGGGAATTATAAGAAGTTGCTTGGTTTGATATCCAGCATAGTGGCAGGAGCTTGTGGTTTGATTTTTGCTATGGTTATAAGTTTCATAAACTTTGTGGGTATGCTGTGTTGTAGCTGTTGTCTCATTTCTGGGTCAACATTCTGGCAACATTCTAGAGCTTTATTCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACAATTATATTCCAGCTAATGATTCCTGCTGTTTTCATGCTTATTGGCCTTCTATTTCTCAAGCTCAAGCCACATCCTGATCAGCAGGGTCTGATCCTTTCAACTTCGTATTTTAATCCTCTGTTGACTGGTGGGGGTGGGGGAGGTCCAATTCCTTTTAATCTATCTTTGCCTATTGCTGAAAAGGTAGCACAAAATGTGAAAGGTGGGTGGATTCAAAGGTACAAGCCAAGCTCATATAAGTTCCCTAATTCAGTGAAGGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTCTAGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCGAGCTTTAATGAATCCTACCAATCTAGGTATGGAGCAATTGTGATGGATGATCAAAATAATGATGGAAGCTTAGGCTACACTGTATTGCACAACTGTTCTTGCCAGCATGCTGCTCCCACCTTTATCAATGTTATGAACAATGCAATTCTTAGACTTGCTACTGGTGACACAAATATGACAATTCAGACACGCAACCACCCACTACCAATGTCACAAAGCCAGCTCATACAACGTCATGACCTGGATGCCTTCTCTGCTGCAATTATTGTCAATATTGCATTCTCTTTCATACCTGCTTCATTTGCTGTTTCCATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAGCAGCTAATTAGTGGGGTTTCTGGGCTTTCATATTGGGCTTCTACATATATTTGGGACTTCGTGAGCTTCTTGTTTCCGGCCTCATTTGCTATAATTCTCTTTTACATTTTTGGTTTGGATCAATTTGTTGGTGGGGTTTCTTTGTTACCAACTACAGTGATGCTTTTGGAATATGGACTTGCAATTGCATCGTCGACTTATTGCCTTACATTTTTCTTTTTTGACCATACCGTGGCTCAGAACGTGGTTCTTTTAATTCACTTCTTCACTGGATTGATTCTAATGGTTATCTCATTCATTATGGGACTTATACCAAACACAATAACTGCTAATACTTATCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCCTTGGCACTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGGATATTTGATTGGAATGTTACGGGTGCCTCCATTTGTTATCTTGCTGTTGAGAGCATTGGTTACTTTTTGTTGACACTTGCACTTGAAGTTTGCCCCTCTCTAAAATTTACTCCATTTATTATCAAGAAGTGGTGGCAGAGTTTAAACATCTTCCACCGTAATACCACATATCTAGAACCTCTCTTAGAACCTTCCTTGGAAACTGTTCCAATGGACTTTGATGAAGATGTGGATGTGAAAACAGAAAGAAGTAGAGTACTTTCAGGTTCCCTTGATAATTCCATTATCTACCTGCGTAATCTTCGTAAGGTGTATCCTGAAGAGAAGTATCTTGGGGAAAAGGTTGCAGTAGATTCGTTAACCTTTTCAGTTCAGGAAGGAGAATGTTTCGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTATCTATGTTATGCGGGGAAGAATCTCCTTCTAATGGAACCGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCTCGCCGATATATTGGATACTGTCCACAATTTGATGCTTTATTGGAGTTTTTGACGGTTCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCGGAATACACTATAGACAATGTCGTTAAGGAAAAGATGGTGGAATTTGGCTTATTAAAGCATGCTAATAAACCATCATTTACTCTTAGTGGGGGGAATAAAAGGAAACTATCTGTTGCAATCGCAATGATTGGAGATCCTCCTATTGTCATCCTTGATGAACCATCTACAGGTATGGATCCCATCGCCAAAAGATTTATGTGGGATGTCATATCTAGGATCTCAACAAGAAGGGGGAAAACTGCCGTAATTCTAACTACCCACAGCATGAATGAAGCTCAGGCCTTATGTACTAGGATAGGAATCATGGTTGGTGGACGATTAAGATGCATTGGAAGTCCTCAGCATTTAAAAACAAGATTTGGGAATCATCTGGAACTAGAGGTAAAACCTACTGAAGTGAATCCTACAGACTTGCAAACACTATGCCAAGCTATTCAGGAAAGAATTTTTTATGTCCCTTCTCATCCTAGAAGCTTGCTTAGCGACCTTGAAGTTTGCATTGGTGGCACTGACTCCATTACCGCAGAAAATAGTTCCATTGCAGAGATTAGCTTGACACGAGAAATGATAGGTTTAATTGGGCGCTGGCTTGGTAATGAAGAAAGAGTCAAGACACTAATCTCCTGTACACCTGTTTCTGATGGAGCTTCTGGGGAACAATTATCTGAACAATTGTTTCGAGATGGTGGTATTCCATTACCAGTATTTTCTGAGTGGTGGTTGTCGAAACAAAAGTTCTCAGAAATTGATTCATTTATACTTTCATCATTTCGGGGAGCAAGGTGGCAAGGGTGCAATGGCTTGAACATCAGATACCAGATACCCTACGAAGAAGGTTTATCTCTGGCAGATGTCTTTGGTATCCTTGAAGGAAACAGAAATAGATTAGGGATTGCTGAGTATAGCATCAGCCAGTCAACTCTGGAGACGATATTTAATCATTTTGCAGCTAATTCATGA 5586 0.4033 MGTASRQLKVMLRKNWLLKIRHPFVTAAEILLPTVVLLLLVAVRTQVDTQIHPAEPHIQKEMFVEVGKGISPNFLQVLESLWEKGEYLAFAPDTDETKLMIDVVSIKFPLLKLVSRVYKDEVELENYIRSDAYGTCSEARNCSNPKIKGAIVFYEQGPQSFDYSIRLNHTWAFSGFPDVKTIMDTNGAFLNDLELGVSAVPTMQYSFSGFFTLQQMVDSFIIFIAQQSDINSSAERVKLPLSGFYDTDFSLNTTWTQFNPAQIRVAPFPTREYTDDQFQSIIKKVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSGIITACTMDNLFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLAFALGSVNFADYERAHVGLRWTNIWRESSGVNFSLCLLMMILDTLLYCVIGLYFDKVLPREYGRRYPWSFVFRRDFWRKKKTGKHCLPNFEVKIAGRNSESDINLLGKDTFEPSIEAISLDMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYEHQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDLDEIRKVLGVCPQHDILFPELTVREHLEIFAILKGVNEDSLEGVVTNMADEVGLADKINSVVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKFKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTVSIASDIVYRHVPSATCVSEVGTEISFRLPLASSSAFEGMFREIEGCMKNPVLNMEISGSGSKDSLGIESYGISVTTLEEVFLRVAGCDYDGVEHFEENDHSHVPDSVALLGSCDHPSTKKCFLGNYKKLLGLISSIVAGACGLIFAMVISFINFVGMLCCSCCLISGSTFWQHSRALFIKRAISARRDHKTIIFQLMIPAVFMLIGLLFLKLKPHPDQQGLILSTSYFNPLLTGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRYKPSSYKFPNSVKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNCSCQHAAPTFINVMNNAILRLATGDTNMTIQTRNHPLPMSQSQLIQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSGLSYWASTYIWDFVSFLFPASFAIILFYIFGLDQFVGGVSLLPTTVMLLEYGLAIASSTYCLTFFFFDHTVAQNVVLLIHFFTGLILMVISFIMGLIPNTITANTYLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGIFDWNVTGASICYLAVESIGYFLLTLALEVCPSLKFTPFIIKKWWQSLNIFHRNTTYLEPLLEPSLETVPMDFDEDVDVKTERSRVLSGSLDNSIIYLRNLRKVYPEEKYLGEKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSNGTAFIFGKDICSHPKAARRYIGYCPQFDALLEFLTVQEHLELYARIKGVPEYTIDNVVKEKMVEFGLLKHANKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVNPTDLQTLCQAIQERIFYVPSHPRSLLSDLEVCIGGTDSITAENSSIAEISLTREMIGLIGRWLGNEERVKTLISCTPVSDGASGEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARWQGCNGLNIRYQIPYEEGLSLADVFGILEGNRNRLGIAEYSISQSTLETIFNHFAANS 1861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151110g00010 1861 FunFam ABC transporter A family member 1 1422 1676 - -
Stsc151110g00010 1861 FunFam ATP-binding cassette sub-family A member 12 524 769 - -
Stsc151110g00010 1861 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1068 1366 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc151110g00010 1861 CDD ABC_subfamily_A 532 753 - -
Stsc151110g00010 1861 Pfam ABC transporter 552 695 IPR003439 GO:0005524
Stsc151110g00010 1861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1429 1665 IPR027417 -
Stsc151110g00010 1861 ProSitePatterns ABC transporters family signature. 1570 1584 IPR017871 GO:0005524|GO:0016887
Stsc151110g00010 1861 Gene3D - 1425 1678 IPR027417 -
Stsc151110g00010 1861 Gene3D - 519 768 IPR027417 -
Stsc151110g00010 1861 CDD ABC_subfamily_A 1433 1659 - -
Stsc151110g00010 1861 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 532 765 IPR003439 GO:0005524
Stsc151110g00010 1861 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1433 1671 IPR003439 GO:0005524
Stsc151110g00010 1861 Pfam ABC-2 family transporter protein 961 1363 IPR013525 GO:0016020|GO:0140359
Stsc151110g00010 1861 Pfam ABC-2 family transporter protein 146 406 IPR013525 GO:0016020|GO:0140359
Stsc151110g00010 1861 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524|GO:0016887
Stsc151110g00010 1861 Pfam ABC transporter 1455 1597 IPR003439 GO:0005524
Stsc151110g00010 1861 SMART AAA_5 1463 1650 IPR003593 GO:0016887
Stsc151110g00010 1861 SMART AAA_5 560 742 IPR003593 GO:0016887
Stsc151110g00010 1861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 771 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151110g00010 Stsc-Chr151110 45967 64112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151110g00010 512 768 Calmodulin-binding Proteins AT2G36910 25.185 2.96e-16 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151110g00010 K05643 - gmx:100803263 3247.6