Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151110g00009 ATGGAGGGAGCAATATTATGTGAGAATAATAATAATAATAGTAGTAGTAATAATAAAGGGTTATTATTGGAATGTGGAAGGAAGTGCAATAATCCACCACCGTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCAACCGACGAAGTCGTGTCGTGGAATGCGGACGGCACGGCGTTCGTAGTGTGGCAGCCGGCGGAGTTTGCCCGCGATCTCCTGCCTACACTCTTCAAGCATAGCAACTTCTCTAGCTTCGTCAGACAGCTCAATACCTATGGTTTTAGGAAAGTTGCAACAAGCAGATGGGAATTCTCCAATGACAAGTTCAAGAGAGGAGAAAGAGAAATGCTATGTGAAATTCGAAGAAGAAGAGCATGGACAAGCAAGCAAAGGAATAATGCAGCAACAACAGCACCAAACCAAGACTCCGATGAAGATCAAAGGTCTTCATCGACTTCTTCGTCTTCGGGTTACACCACTCTAGTGGATGAGAACAAGCGCCTCAAGAAGGAGAATGGGGTGTTGACTTCCGAGCTCACCACCATGAAGAGGAAGTGTAGGGAACTGCTTGATTTGGTGGCGAAATACTCGAAAGCTAATGAAAAGGAAGATGAGGAGGACGAGGAAGAAGATGAAGGTGGAAGGCCAATGCTGTTTGGGGTGAGATTGGATGTTCAAGGACATAGGCAGGTGAAGAGGAAGAGAGAAGAGATACGTGAAAGCGCAAGCATTTTGCTCTCTCAATCATGCAAATAA 759 0.4545 MEGAILCENNNNNSSSNNKGLLLECGRKCNNPPPFLLKTYMLVEDPATDEVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFSNDKFKRGEREMLCEIRRRRAWTSKQRNNAATTAPNQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLTSELTTMKRKCRELLDLVAKYSKANEKEDEEDEEEDEGGRPMLFGVRLDVQGHRQVKRKREEIRESASILLSQSCK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151110g00009 252 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151110g00009 252 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151110g00009 252 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151110g00009 252 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151110g00009 252 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151110g00009 252 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc151110g00009 252 Coils Coil 166 186 - -
Stsc151110g00009 252 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 198 IPR027725 -
Stsc151110g00009 252 MobiDBLite consensus disorder prediction 129 164 - -
Stsc151110g00009 252 FunFam Heat stress transcription factor B-4 27 125 - -
Stsc151110g00009 252 MobiDBLite consensus disorder prediction 130 163 - -
Stsc151110g00009 252 SUPERFAMILY "Winged helix" DNA-binding domain 30 124 IPR036390 -
Stsc151110g00009 252 Gene3D - 27 125 IPR036388 -
Stsc151110g00009 252 MobiDBLite consensus disorder prediction 200 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151110g00009 Stsc-Chr151110 42643 45845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151110g00009 32 225 HSF AT2G41690 56.250 2.84e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc151110g00009 HSF_DNA-bind 6.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151110g00009 K09419 - gmx:100802739 338.576