Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151110g00006 ATGGCTCTCATTGGTCCTTCTGGTGCTGGCAAATCCACCTTCCTTGATGCTCTTGCTGGAAGACTTGCAACCAGTGTCAGTATCACTGGAAATGTATTACTGAATGGCACTAAGAGAACCACATCCTCCAAAGATATTTCTTATGTAACACAAGAAGACTATTTCTTAGGAACACTAACAGTGAGGGAAACACTCACATATGCTGCTTATCTGAGGCTTCCTTCAAACATGACTAAAGATGAAATTGACAAGGTTGTAGTCAAGACACTGGCCGAGATGGGGCTGCAAGATTGTGCCGACAGCAGACTCGGTAACTGGCATTCAAGAGGGATTAGCAAAGGAGAGAAGAGAAGGCTTAGCATCGGCATTGAGATCTTAACTCAACCTCATATTCTGTTGCTTGATGAACCTACCAGTGGATTGGATAGTGCTGCTGCTTTCTTTGTCATTTCATCTCTCAGAAGCATAGCACATGATGGAAGAATTGTTATATGTTCCATTCACCAACTTAGCAGTGACGTTTTCAATCTTTTTGATGACTTGGTGCTGCTTGCAGGAGGCGAAACGGTGTATTTTGGAGAAAGAACTGAAGCTGTTCAGTTCTTCGCTGATGCAGGGTTTCCTTGTCCAACAAGAAAGAATCCTCCCGAGCACTTCCTTCGTTGTGTTAGCCCCGAATTTGATAGTGTTCTAAACTTGATACAATCTAAGAATGCCAATGAAGCACCATTATCATGGAATTCTCTAATGAATATGACAACGGAGGAGATTAAATTGAAACTTATAAACTGTTTCAAGAAATCTAGGCAGTTGGCAAATGCAAGAGAAAAAATCAGAGAAATCAAACTAAGAAAAGAACCTTCAATAGAGAGGGCATATGATACCAGTTGGGTGAAGCAGCTATGCACTTTGACTCATAGATCATTCCTTAACATGACCAGAGACATTGGTTACTATTGCAAGATTGATGGATTCATCTATGGCTTCATGATCTTCCTTTGCATTGGTGGCTTACCCTTCTTCCTTGAGGAGTTAAAGGTCTTCAAGCGCGAAAGGTTTGGAAGGCATTATGGAGAAGCAGTTTATGTGCTGTCAAGTTTCATATCATCATTCCCTTTTGTTGTTTTCATTTCCTTGACTTCAAGAACAACACTTTACCACATGGTGAACTTTCACCCTGGTTTCTCTCATTACTGCTACTTTTGCGTAAACCTGTTCTGCAGCATTTCTGTCACAGAAGGGTGCATGCTTTTAGTTGCTGCTCTTGTTTCCAACCAGCTCCTAGCTATTGGAACTGCAGCCGGTATAACTATATTGATGATGATGCCATCAAACGCATTCCGAAGAATGGTTGATATTCCGAAATTCTTCTGGCGCTATCCAATGTCCTACATCAGCTACATCTCGTGGTCAATACAGGGGCAATACAAGAATGACCTAATTGGACTTGAATTTGAAGGAATGATGCCTGGAGACAAAAAGATAACGGGTGAAAAGATACTTAAGGAGATGTTTGGAATAAGAACAGATTATTCAAAATGGTGGGACATAGGAGCCTTGGTTTGCTTGTTAATATCATACAGATTGCTGTTTTTCTTGGTTCTTAAGCATAGGGAGAGAGCTGCATCTCTGTTTCACACCAAAAGGACTCTCTTGGACATCATTTTGAGAAGATCCTCACTCAAACTCAATCTCAATGACAAATATATATCTTCCAAGAGACACCATTCCCTATATCCTCTGTCATCTCAAGATGGATTTACCTCTCCAATAAAATCTTAA 1782 0.4074 MALIGPSGAGKSTFLDALAGRLATSVSITGNVLLNGTKRTTSSKDISYVTQEDYFLGTLTVRETLTYAAYLRLPSNMTKDEIDKVVVKTLAEMGLQDCADSRLGNWHSRGISKGEKRRLSIGIEILTQPHILLLDEPTSGLDSAAAFFVISSLRSIAHDGRIVICSIHQLSSDVFNLFDDLVLLAGGETVYFGERTEAVQFFADAGFPCPTRKNPPEHFLRCVSPEFDSVLNLIQSKNANEAPLSWNSLMNMTTEEIKLKLINCFKKSRQLANAREKIREIKLRKEPSIERAYDTSWVKQLCTLTHRSFLNMTRDIGYYCKIDGFIYGFMIFLCIGGLPFFLEELKVFKRERFGRHYGEAVYVLSSFISSFPFVVFISLTSRTTLYHMVNFHPGFSHYCYFCVNLFCSISVTEGCMLLVAALVSNQLLAIGTAAGITILMMMPSNAFRRMVDIPKFFWRYPMSYISYISWSIQGQYKNDLIGLEFEGMMPGDKKITGEKILKEMFGIRTDYSKWWDIGALVCLLISYRLLFFLVLKHRERAASLFHTKRTLLDIILRRSSLKLNLNDKYISSKRHHSLYPLSSQDGFTSPIKS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151110g00006 593 Pfam ABC transporter 1 139 IPR003439 GO:0005524
Stsc151110g00006 593 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 319 - -
Stsc151110g00006 593 ProSitePatterns ABC transporters family signature. 111 125 IPR017871 GO:0005524|GO:0016887
Stsc151110g00006 593 Pfam ABC-2 type transporter 168 267 IPR043926 GO:0140359
Stsc151110g00006 593 SMART AAA_5 1 188 IPR003593 GO:0016887
Stsc151110g00006 593 Gene3D - 1 205 IPR027417 -
Stsc151110g00006 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 203 IPR027417 -
Stsc151110g00006 593 Pfam ABC-2 type transporter 324 475 IPR013525 GO:0016020|GO:0140359
Stsc151110g00006 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 211 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151110g00006 Stsc-Chr151110 28992 32377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151110g00006 1 180 Calmodulin-binding Proteins AT2G36910 29.082 5.70e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151110g00006 K05681 - aip:107646291 1040.41