Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151108g00016 ATGGATATTTCTTCCCTCAGAGGGCTAACTGATCTGGAAATAATGGAAGATCCTACCTTTCTTCATCAGTGGCATTTGAGCTCTGTTGATGAGCCTACATTCCTCCCAATTGCTGCTGCTTTTGGAGAGACTTTACAGCATCATTCATTCTCTTATCCTAATTTCAATCCCAAAACTTCCATGGAAACTTCACTTTCTAACATGGAAAGACCTACAAAACATCTCAAGAACAATAGCTGGTGTCCCACTAAAACTCCATCTGAGGCACAATTTGCTTCTTGCTCAACTCTTCTTTCATTTGTGGATCCAAATTATATAAACCAGTTGGAAATGGTGAAGTCTAAGGACGAGATGGCTTGTCCTAAAATGAATGTTGCAACTTCTAAAGACATGACCTCTCAAGGAACCTTAGGAAATCAAAACTATGTGTTTGAGGCTAGTCAGGAGACTAAGCATGTAGGGCCACGTTCTAGAATTTCTCAACCCCAAGACCACATAATAGCCGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTGAAGCAATTGCAAGAGAAAGTGAAGGCTCTTGAGGAGGAACAGAACATGAGAAAAGCAGTGGAATCTGTAGTATTTGTGAAAAAATATCAATTATCCGATAATGCAGAAGATAATTCTTTAGAATCTGAGGGTCTCTTTCATGAGGCACTACCTGAAATTGAAGCAAGATTCTGTGATAAAAATGTTCTCATAAGAATCCACTGTGAAAAGAACAGAGGAGTTGTAGAAAAGACAATCAATCAAATTGAGAAACTCCCTCTAAAAGTTACCAATAGCAGTGCCATGACATTTGGGAGTTGTGCCTTAGACATAACTATTATTGCTCAGATGGAAAAGGGATTTAGCATGACAGTGAAGGAGCTTGTGAGAAACCTGCGCTCAGCTTTTGCATCTATCATTTGA 1020 0.402 MDISSLRGLTDLEIMEDPTFLHQWHLSSVDEPTFLPIAAAFGETLQHHSFSYPNFNPKTSMETSLSNMERPTKHLKNNSWCPTKTPSEAQFASCSTLLSFVDPNYINQLEMVKSKDEMACPKMNVATSKDMTSQGTLGNQNYVFEASQETKHVGPRSRISQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNMRKAVESVVFVKKYQLSDNAEDNSLESEGLFHEALPEIEARFCDKNVLIRIHCEKNRGVVEKTINQIEKLPLKVTNSSAMTFGSCALDITIIAQMEKGFSMTVKELVRNLRSAFASII 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151108g00016 339 Coils Coil 199 226 - -
Stsc151108g00016 339 PANTHER BHLH TRANSCRIPTION FACTOR 42 335 - -
Stsc151108g00016 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Stsc151108g00016 339 Gene3D - 158 234 IPR036638 GO:0046983
Stsc151108g00016 339 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Stsc151108g00016 339 CDD bHLH_AtNAI1_like 163 234 - -
Stsc151108g00016 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 225 IPR036638 GO:0046983
Stsc151108g00016 339 SMART finulus 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151108g00016 Stsc-Chr151108 83116 85156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151108g00016 1 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.896 3.79e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151108g00016 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151108g00016 - - vun:114179595 444.506