Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151108g00005 ATGGAATCCTTGGAAGATCCATATAACTACTTAGCTTCAACCTGGAACTTCAACAACAATACCGAAGGTTTCATTTGTAAATTTAATGGTGTTGAGTGCTGGCATCCCGATGAAAACAGAGTGCTTAATCTGAAACTATCCAACATGGGTCTCAAGGGGGAGTTCCCAAGGGGCCTTCGGAATTGTTCATCTTTGACTGGCTTAGATCTTTCTGTAAACCAGATACGGGGACCAATCCCTTCTGATATATCAAACATACTCACTTATGCTACATCCCTTGATCTCTCAAGTAACAAGTTCAGCGGAGACATTCCAACATCTTTGGCTAACTGCACTTACCTGAATCGTCTCAAGCTTGATGACAACATGCTCAGTGGTGAAATCCCACCAGAATTTGCGTGGCACATGAGGCTTAGGACACTGTCTTTGACCAACAATGAGTTGTCAGGGCCAGTACCTAATTTCAACTATAGTTCAGTAAGTGTTAGCTATGGTAATAATAGAGGGCTTTGCGGAGGACCTTCTTTGCTACCATGCTCTTCGCACAAGCATCTCCACTTACACCTGCACCTAACCTTTAAGGTTGCTCTCCTTCTTGCTTTCCTTTTATCCTTCCTTTGTGTTCTTGTGTACACCATGTGCTGCCGTTCTTCTTCTAGGACTAGGACACGAATGAAGCCCGCCAAATTCAACCACCAAGACTACACATTCAAATATGTCTGCTCCCTCATAAGGTGGAAGATGCGACCGCTAGTTTATTACATACGCCAATTGCTACCCCTTCACTTGCAACTCAATGGAACCCAACAGATAGCGCTGATAATGGAAAGATTGACATCCACTATGAATTTAGAAGAACTCAATGATGCAACAGAAAGCTTTTCTATTGACAATGCCATAGGGGTGGGCAAAATGGGAATAACGTACGAGGGAGTTCTATCTAATGGTTTCCACCTTGCTGTTAAGAGGCTATCCGATCCTCAACTGTTTGAGAGACAAGTTCTTTTGGAGATAAGGATTCTTCGTAACATCCAACACAGGAACATAGTTCCTCTGCTTGGATTCTGTGTTGAGAATAATGAAAGGATTCTGGTGTACCAATATGCATCAAATGGAAGACTTTCCAAATGGTTGCATCCTGTGGAAGCTGAGCCTATGATATTGACATGGCCACAGAGGATCAAGATTGCACTTGGTGTGGCTAGAGCCTTATCTTGGCTTCATCACACTTGCAATTTGCATATTGTGCATCTTAATGTGTCTTCTGAGTGTGTCTTGCTTGATGAGATTTTTGAACCAAAACTCTCAAATTTTGGAGAGGCTAAGTTTATGAACCCCAATAAACATGATGATCTAGGAATGTCTTTTTATGTAGAGGATGGAAAGAAGGATGTTTATGATCTTGGTAGTGTGCTTCTTGAGCTGGTCACTGGAAAAACATTGAAGGAATTGGTGTGTTTATGTGACAATGCTGACTTCTCTGGTGACCCTTCAATTATTTATGATGCAGTTGATAAGTCTCTTATTGGGAAAGGATTTGAAAATGAAGTGTTTACTCTTATCAAAGTTGCTTGTGAGTGTATTCAGGCTATTCCAGATGAGAGGCCAACAATGCTTCAAGTTTACAACAACATGAGCAATGTATGGGGAGAGAGGCATGGGGTTATTGATGATTCTGACATGCTTGCTACGGGATTAGAAATTGTTTCTGCTACTGAAATTGTTGAGTTATAA 1734 0.4146 MESLEDPYNYLASTWNFNNNTEGFICKFNGVECWHPDENRVLNLKLSNMGLKGEFPRGLRNCSSLTGLDLSVNQIRGPIPSDISNILTYATSLDLSSNKFSGDIPTSLANCTYLNRLKLDDNMLSGEIPPEFAWHMRLRTLSLTNNELSGPVPNFNYSSVSVSYGNNRGLCGGPSLLPCSSHKHLHLHLHLTFKVALLLAFLLSFLCVLVYTMCCRSSSRTRTRMKPAKFNHQDYTFKYVCSLIRWKMRPLVYYIRQLLPLHLQLNGTQQIALIMERLTSTMNLEELNDATESFSIDNAIGVGKMGITYEGVLSNGFHLAVKRLSDPQLFERQVLLEIRILRNIQHRNIVPLLGFCVENNERILVYQYASNGRLSKWLHPVEAEPMILTWPQRIKIALGVARALSWLHHTCNLHIVHLNVSSECVLLDEIFEPKLSNFGEAKFMNPNKHDDLGMSFYVEDGKKDVYDLGSVLLELVTGKTLKELVCLCDNADFSGDPSIIYDAVDKSLIGKGFENEVFTLIKVACECIQAIPDERPTMLQVYNNMSNVWGERHGVIDDSDMLATGLEIVSATEIVEL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151108g00005 577 SUPERFAMILY Protein kinase-like (PK-like) 276 543 IPR011009 -
Stsc151108g00005 577 Gene3D Transferase(Phosphotransferase) domain 1 369 560 - -
Stsc151108g00005 577 SUPERFAMILY L domain-like 9 194 - -
Stsc151108g00005 577 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Stsc151108g00005 577 Pfam Protein kinase domain 296 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151108g00005 577 Gene3D Ribonuclease Inhibitor 1 180 IPR032675 -
Stsc151108g00005 577 ProSiteProfiles Protein kinase domain profile. 294 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151108g00005 577 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Stsc151108g00005 577 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 154 - -
Stsc151108g00005 577 FunFam Nuclear pore complex protein NUP107 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151108g00005 Stsc-Chr151108 14392 16784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151108g00005 3 554 Receptor kinase-like Gene Family AT3G28450 36.442 4.34e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc151108g00005 Pkinase 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151108g00005 - - adu:107480601 657.907