Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151107g00014 ATGGGGCGATTCAGCCCCTTGTCAACATGTTTCACACTGGAAAACTTGAGTCCAAGCNNNNNNNNNNTGACAGAAAATGTGCAACTTCTAATCAGGTCTGGGATTGCAGGATCATTGCTGCAGCTTCTTTTTTCAGTAACATCTGTGCTAATGACTCTTCGGGAGCCAGCATCCGCTATTCTTGCAAGAATTGCTCAGTCTGAATCTATCCTTGTTAACCAGGATGTTGCTCAGCAGATGCTTTCACTCTTGAACCTTTCCAGTCCAATAATTCAAGGCCATCTCTTAGAAGCTCTAAGTAGCATTGCTGCACATCCTCGCGCCTCTAAAGTGAGAAGAAAAATGAAAGAAAAAGGAGCACTTCAGCTAATCTTGCCCTTTCTGAAGGAAACTAACACTACAATAAGAAGCAAGGCCCTTAGTTTGCTCTATACTCTCTCCAAAGATCTTACAGATGAGTTGAGTGAACATCTTGATGAAGCTCATCTTATTCACATTGTTAATATTGTCTCATCATCAACATCCGATAGCGAAAAGGCTGCTGCTCTTGGTATACTAAGTAATCTTCCAGTTAGTGACAAAAAGGTGACAGATATTCTGAAGAAAGCAAATTTGTTGTCTATTTTAATATCCAATATGTCTTCGAGCACTGGAAGTAACTCGCCCGTGACAAGAACCTTAGCTGAAATTGTTGCTTGTGTTCTAGTTAGGTTCACAAGTCCTTCTGACAAGAAGCTTCAGCTCTATTCAGCTGAACAAGGGGTGATTCCTTTGCTAGTGAAACTTCTCTCAAGTGGTTCATCAATTGCAAAATTCAGAGCTGCGACGGCTTTGGCTCAGCTATCACAAAATTCTCTGTCCCTCAGGAGGAGTAGGAAGTCAAGGTGGTTTTGTGTTAATCCATCAGCAGAAGCATTTTGTGAAGTGCATGATGGCTTTTGCTATGTCAACACCACATTTTGTCTGGTCAAGGCAGGTGCTGTTTCGGCACTCATCAAAATACTTGAAGATAAGGAGTGGGAAGCAGTTGAGGCTGCTCTGATTGCCCTTTCAACTCTTCTGCAAGACGAAATCTGGGAAGGCGGCGTAAACTGTATAGCCAAGAACTCAGGTGTACAAGCTATTATTAAGATTTTAGAAGCAGGTGATGTGAAGGTTCAGGAAAAAGCATTATGGATGTTGGACAGAATATTCAGGATTCAAGAGCACAGAGTAAAATATGGAGAATCAGCTCAGGTTTTCCTTATTGATTTGGCTCAGACGTGCGATTCTCGGTTGAAGTCAACTGTTGCAAAAGTTTTGGCAGAGCTGGAGCTCCTGCAAGTTCAATCAAGTTATTTCTGA 1344 0.4174 MGRFSPLSTCFTLENLSPSXXXXTENVQLLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNQDVAQQMLSLLNLSSPIIQGHLLEALSSIAAHPRASKVRRKMKEKGALQLILPFLKETNTTIRSKALSLLYTLSKDLTDELSEHLDEAHLIHIVNIVSSSTSDSEKAAALGILSNLPVSDKKVTDILKKANLLSILISNMSSSTGSNSPVTRTLAEIVACVLVRFTSPSDKKLQLYSAEQGVIPLLVKLLSSGSSIAKFRAATALAQLSQNSLSLRRSRKSRWFCVNPSAEAFCEVHDGFCYVNTTFCLVKAGAVSALIKILEDKEWEAVEAALIALSTLLQDEIWEGGVNCIAKNSGVQAIIKILEAGDVKVQEKALWMLDRIFRIQEHRVKYGESAQVFLIDLAQTCDSRLKSTVAKVLAELELLQVQSSYF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151107g00014 447 Pfam Armadillo-like 78 195 IPR006911 -
Stsc151107g00014 447 SMART arm_5 359 399 IPR000225 GO:0005515
Stsc151107g00014 447 SMART arm_5 23 66 IPR000225 GO:0005515
Stsc151107g00014 447 SMART arm_5 108 148 IPR000225 GO:0005515
Stsc151107g00014 447 SMART arm_5 315 355 IPR000225 GO:0005515
Stsc151107g00014 447 SMART arm_5 243 283 IPR000225 GO:0005515
Stsc151107g00014 447 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 447 - -
Stsc151107g00014 447 Gene3D - 7 295 IPR011989 -
Stsc151107g00014 447 Gene3D - 302 441 IPR011989 -
Stsc151107g00014 447 SUPERFAMILY ARM repeat 13 402 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151107g00014 Stsc-Chr151107 82431 84735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151107g00014 28 447 U-box Gene Family AT1G76390 29.130 1.66e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151107g00014 K08332 - gmx:100791453 605.52