Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151106g00007 ATGTCTTGCTCCGTCGCAGTTTCCAATTCTCCGGTGTTCTCTTCTCCCTCGTCTCTCTTCTACTCAAAGCCTTCCATTATTACTTCAATTTCTGCTGCCGCTGCTGCTGCTACGGCGTCGTCTTGCTCCTCACCCGCTTCTTCTCCTTCCTCTCCTTCTCCTTCTTCGCCGTTGCGTCTTCGTCTTCCAAAGGCGCCTACCGCGTTAACAAACCCTAATTCTATTCCTGCTTCTCTTTCGGGTGTTGTTGCGGTGTCTGCTTCTGCTGGTGCTGCCACGTCACCAAACGGCACCGTTTTGAAGAGGAAGAGGCCTGCTAGGCTTGATATACCTGTTAGCTCCTTGGCCTTTGGGATTCCTCCCTCGCCGTCTGCTGCGGCGCCGCGTGATGTTGTCGAGGAGGAGCGTGACGCCTTCTCTGTTTATTGCAAGAGAGGGAGAAGGGAGTACATGGAAGATCGCTACTCCGCTGCCGATAACCTACGCGGAGAACAAAAACTGGCATTTTTTGGAATTTTCGATGGACATGGAGGTGCAAAGGCTGCTGAATTTGTGGCAGATAACTTAGAAAAAAATGTGTTAGATGAAGTGATTCTTAGCGAAGAAGATAGCGTTGAGGAGGCTGTGAAGCGCGGTTATCTCAAGACCGATTCTGCTTTCTTGAAAGGTGATCTCCATGGCGGATCTTGCTGTGTCACCGCCTTGATTAGGAACGGTAACCTTGCCGTGTCCAATGCCGGCGATTGCCGAGCTGTTATAAGCAGAGGAGGTGTTGCTGAGGCCCTAACATCCGATCACCGGCCTTCAAGGGAAGACGAAAGGGACAGAATTGAAACTCAGGTAAGAAGCATTCTAGGAAATGTGCACATGTTTTAG 876 0.5068 MSCSVAVSNSPVFSSPSSLFYSKPSIITSISAAAAAATASSCSSPASSPSSPSPSSPLRLRLPKAPTALTNPNSIPASLSGVVAVSASAGAATSPNGTVLKRKRPARLDIPVSSLAFGIPPSPSAAAPRDVVEEERDAFSVYCKRGRREYMEDRYSAADNLRGEQKLAFFGIFDGHGGAKAAEFVADNLEKNVLDEVILSEEDSVEEAVKRGYLKTDSAFLKGDLHGGSCCVTALIRNGNLAVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIETQVRSILGNVHMF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151106g00007 291 Gene3D - 131 289 IPR036457 -
Stsc151106g00007 291 PANTHER PROTEIN PHOSPHATASE 2C 101 280 IPR015655 GO:0004722|GO:0006470
Stsc151106g00007 291 MobiDBLite consensus disorder prediction 41 57 - -
Stsc151106g00007 291 CDD PP2Cc 139 278 IPR001932 -
Stsc151106g00007 291 MobiDBLite consensus disorder prediction 41 71 - -
Stsc151106g00007 291 Pfam Protein phosphatase 2C 140 279 IPR001932 -
Stsc151106g00007 291 SMART PP2C_4 128 291 IPR001932 -
Stsc151106g00007 291 SUPERFAMILY PP2C-like 139 279 IPR036457 -
Stsc151106g00007 291 ProSiteProfiles PPM-type phosphatase domain profile. 138 291 IPR001932 -
Stsc151106g00007 291 ProSitePatterns PPM-type phosphatase domain signature. 169 177 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151106g00007 Stsc-Chr151106 51477 53815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151106g00007 1 279 PP2C-type Phosphatase Gene Family AT2G30020 55.822 1.16e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151106g00007 K17506 - pvu:PHAVU_008G259800g 344.354