Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151106g00006 ATGTCTTGCTCCGTCGCAGTTTCCAATTCTCCGGTGTTCTCTTCTCCCTCGTCTCTCTTCTACTCAAAGCCTTCCATTATTACTTCAATTTCTGCTGCCGCTGCTGCTGCTACGGCGTCGTCTTGCTCCTCACCCGCTTCTTCTCCTTCCTCTCCTTCTCCTTCTTCGCCGTTGCGTCTTCGTCTTCCAAAGGCGCCTACCGCGTTAACAAACCCTAATTCTATTCCTGCTTCTCTTTCGGGTGTTGTTGCGGTGTCTGCTTCTGCTGGTGCTGCCACGTCACCAAACGGCACCGTTTTGAAGAGGAAGAGGCCTGCTAGGCTTGATATACCTGTTAGCTCCTTGGCCTTTGGGATTCCTCCCTCGCCGTCTGCTGCGGCGCCGCGTGATGTTGTCGAGGAGGAGCGTGACGCCTTCTCTGTTTATTGCAAGAGAGGGAGAAGGGAGTACATGGAAGATCGCTACTCCGCTGCCGATAACCTACGCGGAGAACAAAAACTGGCATTTTTTGGAATTTTCGATGGACATGGAGGTGCAAAGGCTGCTGAATTTGTGGCAGATAACTTAGAAAAAAATGTGTTAGATGAAGTGATTCTTAGCGAAGAAGATAGCGTTGAGGAGGCTGTGAAGCGCGGTTATCTCAAGACCGATTCTGCTTTCTTGAAAGGTGATCTCCATGGCGGATCTTGCTGTGTCACCGCCTTGATTAGGAACGGTAACCTTGCCGTGTCCAATGCCGGCGATTGCCGAGCTGTTATAAGCAGAGGAGGTGTTGCTGAGGCCCTAACATCCGATCACCGGCCTTCAAGGGAAGACGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATCTGTGCCGCGGAGTTTGGAGGATCCAGGGATCCCTTGCTGTGTCGAGGGGAATCGGCGATAGGCACCTAAAACAATGGGTGATCGCCGAACCCGAGACCAAAGTTATCAGAATCGAACCCGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGCAACCAAGAAGCAGTAGACATTGCTCGACCTCTTTGCGTAGGTAGCAGCAAGGCGCAGGCATTGCTGGCGTGTAAAAAGCTCGTAGATTTGTCTGTTTCACGAGGCTCCATGGATGATACAAGTGTTATGCTGATCAAACTTGACCGCTACGTTTGA 1182 0.5059 MSCSVAVSNSPVFSSPSSLFYSKPSIITSISAAAAAATASSCSSPASSPSSPSPSSPLRLRLPKAPTALTNPNSIPASLSGVVAVSASAGAATSPNGTVLKRKRPARLDIPVSSLAFGIPPSPSAAAPRDVVEEERDAFSVYCKRGRREYMEDRYSAADNLRGEQKLAFFGIFDGHGGAKAAEFVADNLEKNVLDEVILSEEDSVEEAVKRGYLKTDSAFLKGDLHGGSCCVTALIRNGNLAVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVIAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDIARPLCVGSSKAQALLACKKLVDLSVSRGSMDDTSVMLIKLDRYV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151106g00006 393 SMART PP2C_4 128 387 IPR001932 -
Stsc151106g00006 393 MobiDBLite consensus disorder prediction 41 57 - -
Stsc151106g00006 393 MobiDBLite consensus disorder prediction 41 71 - -
Stsc151106g00006 393 PANTHER PROTEIN PHOSPHATASE 2C 109 387 IPR015655 GO:0004722|GO:0006470
Stsc151106g00006 393 ProSiteProfiles PPM-type phosphatase domain profile. 138 389 IPR001932 -
Stsc151106g00006 393 CDD PP2Cc 139 389 IPR001932 -
Stsc151106g00006 393 Pfam Protein phosphatase 2C 140 381 IPR001932 -
Stsc151106g00006 393 SUPERFAMILY PP2C-like 139 390 IPR036457 -
Stsc151106g00006 393 Gene3D - 129 392 IPR036457 -
Stsc151106g00006 393 FunFam probable protein phosphatase 2C 25 131 392 - -
Stsc151106g00006 393 ProSitePatterns PPM-type phosphatase domain signature. 169 177 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151106g00006 Stsc-Chr151106 51477 53815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151106g00006 1 393 PP2C-type Phosphatase Gene Family AT2G30020 61.330 3.47e-156 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151106g00006 K17506 - gmx:100797934 533.487