Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151106g00002 ATGGCTTCTTCTTCAACATCAACGTGGGTTAGAGGCAAGTGCGTGGGAAAGGGGGCGTTTGGAACCGTTAACGTGGCGGTTACAAAATCTGACGGTTACGTTTTCGCGGTTAAGTCCGTGGATCTTAAAACGGCTCAGGCGGGTCAGATTGAAGCTTTGGAGAACGAGATTAGAATTCTCAGGCTTCTACCCCGGAGTCCTCAAGTGATCACTTTCCTCGGCGATGATGTCACGTGCGAGAGGACTAACGGAGGCTCCTCCTTCAGGAACCTGCACTTGGAGTACATGCCACGTGGCACCGTCGCTGATTTGGACCCTGCTGACGTGGACGAACGGTTGGTTCGCCGTTACGCTTCCTGCTTGGTTCACGCGCTTCGCCACCTCCACGCGCTTGGCGTTGTTCACTGCGACGTTAAGGGAAGGAACGTGCTGGTTTCCGACGACGGCGGGGCGGTGAAGCTCGCCGATTTTGGATCCGCTGCTGAATTCTCCGGCGAGAGTTGCGTTGGTTCGAGGGGGAGTCCGATGTGGATGGCACCGGAGGTTGTTCGCCGGGAGTATCAGGGGCCGGAGTCTGACGTGTGGTCGTTGGGGTGCACGGTGATTGAGATGGTCACCGGAAAACCACCGTGGGAGGATCACGGCGCTGACACGCTGAGTCGGATCGGATATTCTAGCGAGTTGCCCGAGTTCCCGACGCGGTTATCTGAACTCGGTCGGGACTTTCTCGAGAAGTGTCTAAGAAGGGAGAAGAGTGAGAGGTGGAGCTGCGATCAGCTGCTGCAGCATCCATTTTTGATCGGGGAGGGTTCAATTAAGGCTTTGGAATCGTCGCCTCGGTGCGTTTTGGACTGGGTTGACTCGGGGTTCGACTCGGACGAAGAAATAGTAGGAGACATGAATTTGGAAGGTGAAAGTGTGAGTACGGCAAAGGGTAGAATTGGTAAATTGGCTTCGGGAATGGGGGCAAACTGGGAAACAGAGGGATGGGTAGAGGTGAGAGCATTGGCATCTGAGTCTGACGAAGAAGCAACGGTAATAACAGAAGCAACAGGAAACTGTGAAGGAAGGGTAGTTTCGGAATTTGGAAATGAGGTGGCGAGGGTAGAATCGGGAATCAAGGTGGATGCTCATGCTAATGTGGAATATTCGGCTTTTTGTGGAAGGACAGGAGCGAAAGTTGGAAGGGTAAAATGGGGAAAGCGAAAAAACGAAAGGTTGGTGTGGCGGCGGTGGAAGCTCCACCGTCAGGGAGGTGGTGGCTGTGGTGATAAGTGGGAAGATGAGTTGGATAGGAATGGGTTTAAAGGAATATTCACAATTTACAGCTTAGATTTGCACATTGTTCTTCACTTGATCCCAATTGTGACAGCCGGAATGGCTCAAATTAAATCAACAGGATTCTCATGA 1410 0.5255 MASSSTSTWVRGKCVGKGAFGTVNVAVTKSDGYVFAVKSVDLKTAQAGQIEALENEIRILRLLPRSPQVITFLGDDVTCERTNGGSSFRNLHLEYMPRGTVADLDPADVDERLVRRYASCLVHALRHLHALGVVHCDVKGRNVLVSDDGGAVKLADFGSAAEFSGESCVGSRGSPMWMAPEVVRREYQGPESDVWSLGCTVIEMVTGKPPWEDHGADTLSRIGYSSELPEFPTRLSELGRDFLEKCLRREKSERWSCDQLLQHPFLIGEGSIKALESSPRCVLDWVDSGFDSDEEIVGDMNLEGESVSTAKGRIGKLASGMGANWETEGWVEVRALASESDEEATVITEATGNCEGRVVSEFGNEVARVESGIKVDAHANVEYSAFCGRTGAKVGRVKWGKRKNERLVWRRWKLHRQGGGGCGDKWEDELDRNGFKGIFTIYSLDLHIVLHLIPIVTAGMAQIKSTGFS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151106g00002 469 CDD STKc_MAPKKK 9 266 - -
Stsc151106g00002 469 FunFam Serine threonine protein kinase putative 7 318 - -
Stsc151106g00002 469 SMART serkin_6 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151106g00002 469 SUPERFAMILY Protein kinase-like (PK-like) 7 274 IPR011009 -
Stsc151106g00002 469 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 344 - -
Stsc151106g00002 469 ProSiteProfiles Protein kinase domain profile. 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151106g00002 469 Gene3D Transferase(Phosphotransferase) domain 1 3 303 - -
Stsc151106g00002 469 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc151106g00002 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Stsc151106g00002 469 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151106g00002 Stsc-Chr151106 18842 21149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151106g00002 9 361 MAP Kinase Kinase Kinase AT2G30040 58.310 6.15e-136 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc151106g00002 Pkinase 1.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151106g00002 - - tpra:123921217 455.677