Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151105g00017 ATGAAGGCATTGATTCTGGTTGGAGGGTTTGGAACAAGGTTGAGACCACTGACACTTAGTTTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAGGCTCTTAAGGCCATTGGAGTTTCTGAAGTAGTACTTGCTATCAATTACCAGCCAGAGGTTATGCTGAATTTTTTGAAGGATTTTGAAGAAAAGCTTGGCATCAAGATCACATGTTCTCAAGAAACTGAACCATTGGGAACTGCAGGCCCCCTTGCTCTTGCTAGGGATAAGCTGATAGATGAANNNNNNNNNNTCGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAAGAGATGATTGAATTCCACAAATCCCATGGAGGAGAGGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATACGGTGTGGTTGTGATGGAGGAGAAAACGGGGAAGGTTGAGAAGTTTGTGGAGAAGCCAAAGCTCTTTGTTGGTAACAAAATCAATGCTGGAATCTACCTGTTGAACCCCTCTGTCTTGGACCGAATTGAACTGAGGCCCACTTCCATTGAGAAAGAGGTGTTTCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTTCTTCCTGGATTCTGGATGGACATTGGACAACCAAAGGACTATATTACCGGTCTGAGACTTTACTTAGACTCATTGAGGAAGAAGTCTTCTCCTAAGTTGGCTAGTGGAGCACACATTGTTGGGAATGTCATTGTGGATGAGACAGCCAAAATTGGCGAGGGATGTCTCATTGGACCTGATGTCGCCATTGGTCCTGGCTGCGTTGTTGAGCCAGGTGTTCGGCTCTCACGCTGCACGGTAATGCGGGGAGTCCGGATTAAGAAGCATGCTTGTGTATCTAGCAGTATTATTGGGTGGCATTCCACAATTGGGCAATGGGCAAGAGTGGAGAATATGACTATCCTTGGAGAAGATGTCCATGTATGCGATGAAATTTATACCAATGGTGGTGTCATTTTGCCTCACAAAGAGATCAAGTCGAGTATTCTGAAGCCGGAGATAGTCATGTGA 1080 0.4417 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVSEVVLAINYQPEVMLNFLKDFEEKLGIKITCSQETEPLGTAGPLALARDKLIDEXXXXVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEEKTGKVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKKSSPKLASGAHIVGNVIVDETAKIGEGCLIGPDVAIGPGCVVEPGVRLSRCTVMRGVRIKKHACVSSSIIGWHSTIGQWARVENMTILGEDVHVCDEIYTNGGVILPHKEIKSSILKPEIVM 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151105g00017 359 FunFam mannose-1-phosphate guanyltransferase beta 1 230 - -
Stsc151105g00017 359 Pfam Nucleotidyl transferase 2 227 IPR005835 GO:0009058
Stsc151105g00017 359 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 310 IPR029044 -
Stsc151105g00017 359 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 358 - -
Stsc151105g00017 359 CDD M1P_guanylylT_B_like_N 1 232 IPR045233 GO:0004475|GO:0005525|GO:0009298
Stsc151105g00017 359 Gene3D Hexapeptide repeat proteins 234 354 - -
Stsc151105g00017 359 Pfam Bacterial transferase hexapeptide (six repeats) 259 293 IPR001451 -
Stsc151105g00017 359 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151105g00017 Stsc-Chr151105 111798 115208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151105g00017 1 145 Eukaryotic Initiation Factors Gene Family AT4G18300 23.226 4.83e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151105g00017 K00966 - aew:130763260 672.93