Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151105g00008 ATGGCTCCTCCTTCTGATATCAATCACTATTCTCATCCATGCATATATGGGGATTATAGTTCTTCACGCTCAGAGAGAAGGCCTGGTTTCATGAGATGGCTAAGTAGGCTTTTCAAAGGAGGGTCCAATAGAGGAAGAGGCGGCCGTCGCTTCCAAGAACCGGATGAGGAAAACATGGCTTGGCGCGCGCCGTCTAGACCATTGGATGATGGTGCTAGAGCTCATAATAGGGAGAAAGACGACCTTGGCCATGCGATGTCACGATCTTCAGCTGAAGATTTAAAGAGACCAAATGCACATCAAGGATATAATTGGGGCACAGACAATGATGATTATGGAAAAGCACTTCAAGATAGTTTGAACTCATCTGCATACCCTCCATATAATGCTGCTCCATATTACCCCAGAGACTATAGAAAAATATGTGGAGGGTGTAACCAGGAGATACTCTATGGAAATTGTTTGGGATGCATGGATACTTATTATCATCCAGATTGCTTTCGATGTCACTCTTGTCAGTATCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAACATCCATACCACAAATCCTGTTTTAAAGAGTTGACTCACCCAAAGTGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGGTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATTATACATCTCGCTGCTGCAGTTGCGAAAGATTGGAGCCTCGGAATGTAAAATACTATAGACTTGAAGATGGACGAAGCTTATGCATGGAGTGCATGGAATCTGCTATAATCGACACCGGTGACTGCCAGCCCCTTTACCATTCCATCAGAGATTACTATGAAGGGATGAATATGAGAATAGATCAACAAATCCCAATGCTTCTTGTGGCCAGAGAAGCACTCAATGAAGCTATTGTTGGGGAGAAAAATGCTGTTCATCACATGCCAGAAACAAGGGGCATATGCCTTTCAGAAGAGCAGACTATCACCAGTATTCATAGAAGGCAAAGACATGGAGGCCATAGACGAATGGGGATGAGAACTCAAAATCAAATGCTGGTTAGAAGATGTGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCAAGGTTACTCACAGGTGCCATCCTTGCCCATGAGTTAATGCATGCATGGTTAAGGCTTAAAGGTTACCGCAACCTGAATCCTGAGGTAGAGGAAGGTATATGTCAGGTTCTCTCATACATGTGGCTTGAGTCAGAAGTAGTGCCATCAACATCGGCAGCATCATCTTCATCTTCTTATCCTTCCTCATCCTCCTCAAAGAAAGGAGCAAGGTCTCATGCTGAAAACAAATTGGGAGAGTTTTTCTTGAATCAGATTGCAAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCAAATGAAGCTGTTAATAAGTATGGTTTACGCGCCATTCTTGACCATATTCGTTACACTGGTCTTCTACCAGAGTAG 1509 0.4334 MAPPSDINHYSHPCIYGDYSSSRSERRPGFMRWLSRLFKGGSNRGRGGRRFQEPDEENMAWRAPSRPLDDGARAHNREKDDLGHAMSRSSAEDLKRPNAHQGYNWGTDNDDYGKALQDSLNSSAYPPYNAAPYYPRDYRKICGGCNQEILYGNCLGCMDTYYHPDCFRCHSCQYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDYTSRCCSCERLEPRNVKYYRLEDGRSLCMECMESAIIDTGDCQPLYHSIRDYYEGMNMRIDQQIPMLLVAREALNEAIVGEKNAVHHMPETRGICLSEEQTITSIHRRQRHGGHRRMGMRTQNQMLVRRCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVVPSTSAASSSSSYPSSSSSKKGARSHAENKLGEFFLNQIANDSSPAYGGGFRAANEAVNKYGLRAILDHIRYTGLLPE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151105g00008 502 Pfam Protein DA1 291 496 IPR022087 -
Stsc151105g00008 502 CDD LIM_DA1 142 194 - -
Stsc151105g00008 502 SMART lim_4 141 193 IPR001781 -
Stsc151105g00008 502 MobiDBLite consensus disorder prediction 43 107 - -
Stsc151105g00008 502 Gene3D Cysteine Rich Protein 128 199 - -
Stsc151105g00008 502 Pfam LIM domain 142 195 IPR001781 -
Stsc151105g00008 502 MobiDBLite consensus disorder prediction 46 95 - -
Stsc151105g00008 502 FunFam Protein DA1-related 2 131 195 - -
Stsc151105g00008 502 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 167 - -
Stsc151105g00008 502 PANTHER PROTEIN DA1-RELATED 2 33 501 IPR045218 -
Stsc151105g00008 502 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151105g00008 502 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Stsc151105g00008 502 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151105g00008 Stsc-Chr151105 30269 34603 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc151105g00008 DA1-like 2.2e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151105g00008 - - gmx:100784976 840.106