Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151105g00006 ATGGAGGAAAATTTTGAGTCCTCTCATGTCCCACAACAAAGCAGAAGGAACAAGCTCAGAGAAATGGTCCAAACCCAAAAACAGCAACCACCACCACCACAACCATTCCCTCCTTCATTTCATCAAGCCAGCATAGCTCAACCCTTTGAGACAAACCCAATTTCATCAACATTGAACTCCAAACCACCCCATTATCATTCCTTTCTAGCAAAGAGTTCTTCACAGCTAGAACATTACCCTGCAACTGCAAGCCTTCACAATCTTCTTCTTCCACCCCATTTGGTGGATCATAATCATCATGTGTCCCAAGAAACATGCAGTGATATCAAAAACATTGGTGCTGTGGTTGTTCCTTTTACAGGCTATGCTTCCATATTGAAGAGATCAAGGTTTCTGAAGCCAGCTCAGCAGATTCTTGAAGACATGTGTGGAAGTGTTTTGGTTCCTCCACCAAGATTGAATGGAAGTGGTGATGATCATGAAGAAGACTACCCCATCATTGGAACTAATGCTAGAGATGGAATTCAGCATCATTGTAGGGATTCTGTTCTTGGTTGCATGCTAGATGAGGTATACAAGAAGTACATTCTATACTGCCAACAAATGCAATCAGTGGTGTCATCATTTCAGAAAGTAGCTGGACTAGGAAATGCCACTCCATACATATCCTTTGGTATCAAATCCATTTCCAAGCATTTTGGATGTTTGAAACATGCTATCTATGATCAACTTCAGTTCACAATGAAGAACACTACTTCTCATCCTGCATCTAACAATGTTCTTGAAAAGGAAAGTTTGAATCATATAACATTTGAAAAGGGTCTTAAGAACTCTGTCCAACCTGTTTTGAGATCCCAAAGAGGGCTTCCTGATCATGCTGTAGCTTTGTTGAGGAAATGGCTCTTTGAACACTTCTTACACCCATATCCTACTGATTCTGAAAAGGATACATTGGCTCAAGAAACTGGCCTTTCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTGAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGAATGGGGAACAAGAATCAAAAGTTAACCATAATGCAAAAGAGCCCACTATTTTCCCATTAACCACAGTTACTAAGCCCATGTGA 1134 0.4083 MEENFESSHVPQQSRRNKLREMVQTQKQQPPPPQPFPPSFHQASIAQPFETNPISSTLNSKPPHYHSFLAKSSSQLEHYPATASLHNLLLPPHLVDHNHHVSQETCSDIKNIGAVVVPFTGYASILKRSRFLKPAQQILEDMCGSVLVPPPRLNGSGDDHEEDYPIIGTNARDGIQHHCRDSVLGCMLDEVYKKYILYCQQMQSVVSSFQKVAGLGNATPYISFGIKSISKHFGCLKHAIYDQLQFTMKNTTSHPASNNVLEKESLNHITFEKGLKNSVQPVLRSQRGLPDHAVALLRKWLFEHFLHPYPTDSEKDTLAQETGLSRCQVSNWFINARVRIWKPMVEEMHMNGEQESKVNHNAKEPTIFPLTTVTKPM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151105g00006 377 MobiDBLite consensus disorder prediction 1 42 - -
Stsc151105g00006 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 354 - -
Stsc151105g00006 377 SMART HOX_1 283 347 IPR001356 GO:0003677
Stsc151105g00006 377 SMART prehox3 120 242 IPR006563 -
Stsc151105g00006 377 CDD homeodomain 284 344 IPR001356 GO:0003677
Stsc151105g00006 377 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Stsc151105g00006 377 Gene3D - 286 364 - -
Stsc151105g00006 377 SUPERFAMILY Homeodomain-like 287 350 IPR009057 -
Stsc151105g00006 377 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Stsc151105g00006 377 Pfam Associated with HOX 125 240 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151105g00006 Stsc-Chr151105 19939 22283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151105g00006 118 350 Homeobox Transcription Factor Family AT5G02030 47.126 5.73e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc151105g00006 POX 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151105g00006 - - adu:107457744 599.742