Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151104g00034 ATGATTTTTTGGCACCAAAGCGATCCAGTTATTCTGAAAAGAATAACAAATTCATTTCGAGACAAATTAGGACAAGGTGGCTATGGTATTGTATACAAAGCAACTTTAAGTGATGGTCGTGAAGTTGCAGTGAAGATACTAAGTGAGTCCAAGGGAAGTGGAGAAGAGTTCATAAATGAAGTTGCTAGTATTAGTAGAACATCGCATGTGAACATTGTCTCATTGTTGGGATTTTGTTATGATCAAGGTAGAAGAGCACTTATTTATGAATTCATCTCTAATGGTTCTTTAGATAAGTATATCTACAAGTCAGGATCTTCTGGGACCTTTTGTAATTTGGATTGGAACATTTTGCACAAAATTGCAATTGGCATTGCTCAAGGGCTAGAATACTTACATCAAGGATGTAGTACAAAAATCTTGCATCTGGATATCAAACCTGAAAATATTCTTTTAGATGAAGATTTTTGTCCAAAAATCTCAGATTTTGGACTAGCTCGAATATGTCAAAAGAAAGAGAGTAATGTATCTATTCTAGGTACAAGAGGAACTCCATGTTATATTGCACCAGAAGTCCTCAGCCGATCATATGGTAGAGTTTCTGATAAATCTGATGTATATAGTTACGGTATGTTAATCCTTGATATGTTTGGAAAAAGGAATATCTTCAACAACAAAGGATCACATCCGAGTGAAATGTATTTTCCTGATTGGATTTATGAGGATCTTAACCAAGGTAATATTCTTGGCGGACACTCTGATATTTCAGAAGAAGAAAATGATATGATAACAAAAATCATATTAGTAAGTTTGTGGTGTATTCAACCAAATCCATCACATAGGCCATCAATGAGTAAAGTTGTGGAGATGTTGCATGGAGAACTTGAATCAGTGCCGTTTCCTCCAAAGCCTGTGTTGTATTCTCCTGAAAAGTCTCTGTTAGAAGCTTCAGACATATCTTCCAGCAGTAAACATGAGACAATTTTGACAACCACAGAGGAGAGTAGTTCCACACATCATACAAAATGA 1029 0.3557 MIFWHQSDPVILKRITNSFRDKLGQGGYGIVYKATLSDGREVAVKILSESKGSGEEFINEVASISRTSHVNIVSLLGFCYDQGRRALIYEFISNGSLDKYIYKSGSSGTFCNLDWNILHKIAIGIAQGLEYLHQGCSTKILHLDIKPENILLDEDFCPKISDFGLARICQKKESNVSILGTRGTPCYIAPEVLSRSYGRVSDKSDVYSYGMLILDMFGKRNIFNNKGSHPSEMYFPDWIYEDLNQGNILGGHSDISEEENDMITKIILVSLWCIQPNPSHRPSMSKVVEMLHGELESVPFPPKPVLYSPEKSLLEASDISSSSKHETILTTTEESSSTHHTK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151104g00034 342 MobiDBLite consensus disorder prediction 316 342 - -
Stsc151104g00034 342 SMART serkin_6 17 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151104g00034 342 Gene3D Transferase(Phosphotransferase) domain 1 92 298 - -
Stsc151104g00034 342 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 316 IPR045874 GO:0004672
Stsc151104g00034 342 SUPERFAMILY Protein kinase-like (PK-like) 8 291 IPR011009 -
Stsc151104g00034 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Stsc151104g00034 342 PIRSF TyrPK_CSF1-R 16 111 - -
Stsc151104g00034 342 PIRSF TyrPK_CSF1-R 103 342 - -
Stsc151104g00034 342 Gene3D Phosphorylase Kinase; domain 1 7 91 - -
Stsc151104g00034 342 FunFam PR5-like receptor kinase 92 302 - -
Stsc151104g00034 342 ProSitePatterns Protein kinases ATP-binding region signature. 23 45 IPR017441 GO:0005524
Stsc151104g00034 342 ProSiteProfiles Protein kinase domain profile. 17 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151104g00034 342 Pfam Protein kinase domain 21 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151104g00034 342 MobiDBLite consensus disorder prediction 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151104g00034 Stsc-Chr151104 140435 141780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151104g00034 12 322 Receptor kinase-like Gene Family AT5G38280 56.918 2.32e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc151104g00034 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151104g00034 - - aip:107635702 458.373