Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151104g00023 ATGGCTGACGTTGTTGAATACCGTGCAAATTCCAACACAAACACCCCTACCACCCCACCATCTCTAAAGCTCTTTGGCATCAACATTCATCATCACAAGATCTCAAGAGATCAAAACCCTACTTCTATGAATCAATCATCACCATCACCACCACCGAAATCTCAAGAAGATAATTCTTCTTTTGATTACCCTTTTAATAACTCATCATCATCATCATCAAGGGATGCAAGAAAATATGAGTGCCAATATTGTTTTAGAGAGTTTGCAAATTCACAAGCACTTGGTGGACACCAAAATGCACACAAGAAAGAAAGGCAGCTCCTCAAACGTGCTCAAATGCAAGCTGCACGTGGCTTTGTTGCTTCACATCACATTCATCAAACCACAATCATGTCATCACAGCTGCCACATCTTCTACCTGTTGGTGCCGGTGTGCCGCCACCACCTCAGGCATCTTCATGGTTGTATCATGCAGGTCGCGGCGCACCCAGCTTTGGTGATAATGCATATCATCCAGGAGGAGTCTTCGTGGCTCCTCCTGGAAGGCGTGTCTATGGTGGTGATGGCGGCAGCAATCAATTCGAGGGATCTCACTTGTTTAAAACAAGTTGGTTAGCTAATAACCGTGATCACCACCATCGTTATCGTCCTCTGTCGGAATTTGATGGCCTTAACAGTGATAGCAACGATGGTGGTGACCAATTTAGTAGCAGTGAAGAAGGGTTCAAATTAAATTTGCATCTTAGCTTATAA 753 0.4409 MADVVEYRANSNTNTPTTPPSLKLFGINIHHHKISRDQNPTSMNQSSPSPPPKSQEDNSSFDYPFNNSSSSSSRDARKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHHIHQTTIMSSQLPHLLPVGAGVPPPPQASSWLYHAGRGAPSFGDNAYHPGGVFVAPPGRRVYGGDGGSNQFEGSHLFKTSWLANNRDHHHRYRPLSEFDGLNSDSNDGGDQFSSSEEGFKLNLHLSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151104g00023 250 MobiDBLite consensus disorder prediction 7 22 - -
Stsc151104g00023 250 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
Stsc151104g00023 250 Gene3D Classic Zinc Finger 54 133 - -
Stsc151104g00023 250 PANTHER ZINC FINGER PROTEIN 5 11 250 IPR044299 GO:0010090
Stsc151104g00023 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Stsc151104g00023 250 MobiDBLite consensus disorder prediction 38 73 - -
Stsc151104g00023 250 MobiDBLite consensus disorder prediction 1 73 - -
Stsc151104g00023 250 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151104g00023 Stsc-Chr151104 92178 92930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151104g00023 17 156 C2H2 Transcription Factor Family AT1G67030 46.711 1.21e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151104g00023 - - aip:107638204 268.47