Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151104g00014 ATGGCTGGTCCAACAACACCCCCCACTGCAACTGGCAAGGCATTACCTGTAACAGTTACGCCTACAACAGCGTCACCTCCATCCACCAATCTTCCCAACTTGAACTACCTCAGCCTAACCAACAACTTCAACCTCCCACCATGGACCTTCTCAAACTATCTCACTCTCACTAACAACAGTCACAATCTTCTTGAGTATCTAAGCCTCACCGCCACTAACTTGTACTCTACCTTACCACAACATATTTTCTCTTCCTTCTTCTTCCCCAGATTGAAACAGTTACATCTCTCTCATAACAATCTCACTGGTGAAATCCCCAACTCTTTATCACAAATAGAAATTGAGATTTTAGCCCTTGATAACCAGAAATCAAGCTTATCAGGCTCCATAGCTTTAATTTCCAGCATGATCCACTTGAATGAGGTGCGGCTTCAGAATAACAAGTTCACAGGTCATGTTCCTGACCTAACTGTTGATCACTACAATTTGACTGAGCTGAGGCTTGACAACAATTTCTTAACTGGTGAGGTTCCATCTTCTTTGGCGATTCTACCAAGGTTGACTCAAATTTCTTTGGAGAACAACATGCTGAGGGGTCCATTACCAAAGTTTAGAAAGAGTGTGAGCCTCACTTTCCAACCAATCAACAGGTTGTGTCCACAATCTGATGATGGACTCTGTGACCTCATGGTTTTGCTTGACATTGCACAAGCATTTGGGAATCCAATTCAGTTGGCCAGTTCATGGAGATGGAAAAACAACACTAACTGCCAAGATTGGAGTTTCATTGTGTGCCAACAAGGGAAGGTTGTTTCTGTCAATTTGGCCAGGCAAGGTTTAACGGGGTTGATGATCCCTCCTTCATTTGCTAATTTAAGTGATTTGAATAACTTGAATTTGAGTGGAAATAATTTGAGGGGTTCAATCCCTAAGAGCATCACAACATTGCTTCACCTAGAGTCTCTGGATTTGTCTTATAACAACTTATCTGGAGAGGTTCCTATATTTCCAGCAAGAGTGAAGCTCAATATCACCAATAATCCATTGCTCCAAAGCTCTCAAACACATCCACCATTGTTCCCAGTTCCTTGGATAGCAGAGCTTCAAAATAACAAGTTCACCGGTCCCATTCCTGACTTGTCAAACTCTCCCTATTTGGATGAACTCAGGCTCGATAGCAACTTCTTAACCGGTGTGGTTCCACCTTCTCTTGCCAATCTCCACAACTTGAAACACCTTTCTTTGGATAACAACATGCTAAGGGCTCCAATACCTAACTTTGTCAAGAATATCCCATTCAGTAGTTGCCATCCAATCAATAGATTGTGTCCGGAGTCTGATGGGCTTTGCGATCAGATGATTTTGCTTGACATTGCACAAGCCGTTGGGAATCCATTTCAGTTGACTGATTCATGGAAATGGGACAACCCTAATTGCCAAAATTGGGACTTCATTGTGTGCCGAGAAGATGATGGGAAGGTGGTTGCTGTGAATTTGGCAAGGCTAGGCTTGATGAGGATGATCTCACCTGAGTTTGCTAATTTAACTGATTTGAAGACTTTGAATCTGAGTGGAAATAGTTTGACAGGTTTAATACCAGCAAGCTTGGTAACTTTGTCTCAACTTGAGACTCTGGATTTGTCTTATAACAATTTATCCGGAGAGGTACCCAAGTTTCCAACTAGAGTGAAGTTGAACATAACTGGTAATCCTTTGCTTCGAAATTCTCAAGGACATTCAACATTCCCAACTGTTTGGGTAGCAGGTGCATTAGCAATAACAATCGTTGGATTTGTAATGCTTATTGTGATTGTTTATAATCAAGAAAGGTGTCTTAGTTTAGTACCAAAAGGATTCTTCAAGAGTTCAGATTGCAGTGCTGAGGGCTTGATGAAAAGATATAGTTTTTTAGCACCGAAGCACTACACTTATTCAGAGATTAAAAGAATGACAAAATCGTTCCGACATAAATTAGGTCAAGGAGGATTCGGTGCTGTGTACAAAGGAAGCTTACAAAATGGTCGCCATGTGGCGGAGAGTGTTGTATCTTTGTTGGGGACAAGAGGAACTATAGGATATATTGCACCAGAAGTTTTAACTCGAAGATATGGCGGAGTTTCTCATAAATCTGATGTATACAGTTATGATATGTTGATTCTTGAAATAATTGGTGGAAGAAATTGTCGTCATAAAGCATCAAACAGTAGCGAGATGTTTCTTCTGGAAAAGATATATGAAGATCTGGATCAATATACCATCCATTCAAGTTATTCGCCTATCAATGAGGAAGAAGCTGGGATATTGAAGAAGATGATCATGGTGAGTCTTTGGTGCATTCAAACAGTCCCAACAAATAGGCCATGTATCACTAAAGTAATAGAGTTGCTAGAAGGACCTCTACAATCAGTGCCATTTCCTCCAAAATCCACCTCCTATTCTCCTAACAATGTTGTACCCTTACAATTTTCAGATGCATGCTCTTCCAGCAGTGGTATATATGTAACAAATTCAATACCTCAACCAGAAGATGTACCATAA 2538 0.4078 MAGPTTPPTATGKALPVTVTPTTASPPSTNLPNLNYLSLTNNFNLPPWTFSNYLTLTNNSHNLLEYLSLTATNLYSTLPQHIFSSFFFPRLKQLHLSHNNLTGEIPNSLSQIEIEILALDNQKSSLSGSIALISSMIHLNEVRLQNNKFTGHVPDLTVDHYNLTELRLDNNFLTGEVPSSLAILPRLTQISLENNMLRGPLPKFRKSVSLTFQPINRLCPQSDDGLCDLMVLLDIAQAFGNPIQLASSWRWKNNTNCQDWSFIVCQQGKVVSVNLARQGLTGLMIPPSFANLSDLNNLNLSGNNLRGSIPKSITTLLHLESLDLSYNNLSGEVPIFPARVKLNITNNPLLQSSQTHPPLFPVPWIAELQNNKFTGPIPDLSNSPYLDELRLDSNFLTGVVPPSLANLHNLKHLSLDNNMLRAPIPNFVKNIPFSSCHPINRLCPESDGLCDQMILLDIAQAVGNPFQLTDSWKWDNPNCQNWDFIVCREDDGKVVAVNLARLGLMRMISPEFANLTDLKTLNLSGNSLTGLIPASLVTLSQLETLDLSYNNLSGEVPKFPTRVKLNITGNPLLRNSQGHSTFPTVWVAGALAITIVGFVMLIVIVYNQERCLSLVPKGFFKSSDCSAEGLMKRYSFLAPKHYTYSEIKRMTKSFRHKLGQGGFGAVYKGSLQNGRHVAESVVSLLGTRGTIGYIAPEVLTRRYGGVSHKSDVYSYDMLILEIIGGRNCRHKASNSSEMFLLEKIYEDLDQYTIHSSYSPINEEEAGILKKMIMVSLWCIQTVPTNRPCITKVIELLEGPLQSVPFPPKSTSYSPNNVVPLQFSDACSSSSGIYVTNSIPQPEDVP 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151104g00014 845 FunFam Leucine-rich repeat receptor-like kinase 227 353 - -
Stsc151104g00014 845 PANTHER OSJNBA0070M12.3 PROTEIN 688 798 - -
Stsc151104g00014 845 Gene3D Phosphorylase Kinase; domain 1 623 683 - -
Stsc151104g00014 845 MobiDBLite consensus disorder prediction 11 26 - -
Stsc151104g00014 845 SUPERFAMILY Protein kinase-like (PK-like) 640 816 IPR011009 -
Stsc151104g00014 845 SUPERFAMILY RNI-like 29 353 - -
Stsc151104g00014 845 FunFam Leucine-rich repeat receptor-like kinase 451 576 - -
Stsc151104g00014 845 Gene3D Ribonuclease Inhibitor 19 221 IPR032675 -
Stsc151104g00014 845 Gene3D Transferase(Phosphotransferase) domain 1 684 805 - -
Stsc151104g00014 845 MobiDBLite consensus disorder prediction 1 26 - -
Stsc151104g00014 845 ProSiteProfiles Leucine-rich repeat profile. 90 112 IPR001611 GO:0005515
Stsc151104g00014 845 Pfam Leucine rich repeat 512 552 IPR001611 GO:0005515
Stsc151104g00014 845 Gene3D Ribonuclease Inhibitor 450 577 IPR032675 -
Stsc151104g00014 845 Gene3D Ribonuclease Inhibitor 365 437 IPR032675 -
Stsc151104g00014 845 Gene3D Ribonuclease Inhibitor 228 354 IPR032675 -
Stsc151104g00014 845 Pfam Leucine Rich Repeat 90 110 IPR001611 GO:0005515
Stsc151104g00014 845 SMART LRR_typ_2 88 112 IPR003591 -
Stsc151104g00014 845 SMART LRR_typ_2 407 430 IPR003591 -
Stsc151104g00014 845 SMART LRR_typ_2 515 538 IPR003591 -
Stsc151104g00014 845 SMART LRR_typ_2 31 52 IPR003591 -
Stsc151104g00014 845 SMART LRR_typ_2 539 570 IPR003591 -
Stsc151104g00014 845 SMART LRR_typ_2 316 338 IPR003591 -
Stsc151104g00014 845 PRINTS Leucine-rich repeat signature 539 552 - -
Stsc151104g00014 845 PRINTS Leucine-rich repeat signature 319 332 - -
Stsc151104g00014 845 SUPERFAMILY RNI-like 272 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151104g00014 Stsc-Chr151104 53228 59769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151104g00014 61 708 Receptor kinase-like Gene Family AT5G07280 28.317 6.49e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc151104g00014 LRR_8 7.6e-09 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151104g00014 K00924 - gmx:100286794 253.832