Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151103g00008 | ATGGGTAGTCCTGTCTATGGTCAGTTGGGAAATCCTCAAGCTGACGGGAAGCTACCAAGCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATTGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACAGAAGTTTACACATGGGGGAAGGGTGCAAATGGTCGTTTAGGCCACGGGGATTCAGATGACAGAAATGTCCCAACATTAGTAGAAGCTTTGAAAGACAAACAGGTCAAAAGTGTTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGTCTTCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTCTGTCATTCTTGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGACAATTGTTTTAATAAACTAAGGAAATCCATGGAAACTGATTCTTCATCCCATTCTTCTGTGAGCAGAAGAGGCAGTATCGTTCCAGGGTCACTTGAGTTAATTGATAAGGATGATAAGCTGGATTCAAGATCTCGTGGTCAACTGGCTAGGTTTTCTTCAATGGAGTCCTTTAAGCAAGTGGAAAGCAGATCTTCTAAGAAAAACAAGAAGTTGGAATTCAACAGTAGCCGTGTCTCTCCTGTCCCAAATGGGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTCTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACGTCTCCAATATCTAGACGGCCTAGTCCACCACGTTCAACTACTCCAACTCCAACACTGGGAGGTCTTACTTCCCCAAAGATAGCTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGACAGCAGGTGGAAAACCTGACTCGGAAAGCGCAACATCAAGAAGTTGAGTTGGAAAGGACAACTAAACAGCTAAAGGATGCTATAGCAATTGCTGGAGAGGAAACTGCGAAGTGCAAAGCAGCAAAGGAAGTGATCAAATCTCTTACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCAGCTAGGAATGCCAAATCTCCTTCTCTTGCTTCCTTTGGTTCCAATGAGCTTAGCTATGCTTCCATTGATCGATTGAATCTTCAAGCTACAAGCCCAGAAGCAGACTTAACTGGATCAAATAATCAGTTGCTTTCAAATGGATCCAGCACTGCCAGCAACCGTATTAGTGCTGGTCACAATAAACAGAACCAGTCAGAGGTAACTAACAAAAATGGGGGCAGAACAAAGGACAGTGAATCCCGTAGTGAGAATGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACCTCCCTTCCTGGAGGCGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGAAAGCGGTTCAGTGAGAAACAAGCAGAACAATGGTGGGCCGAGAATCGTGCAAGAGTATATGAGCAATACAATGTTCGCATGATTGACAAGTCCAGCGTTGGTGTTGGGAGTGAAGACCTGGCTCACTGA | 1647 | 0.4353 | MGSPVYGQLGNPQADGKLPSRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDSDDRNVPTLVEALKDKQVKSVACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKSMETDSSSHSSVSRRGSIVPGSLELIDKDDKLDSRSRGQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIAVDDAKRTNDSLSQEVIKLRQQVENLTRKAQHQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNAKSPSLASFGSNELSYASIDRLNLQATSPEADLTGSNNQLLSNGSSTASNRISAGHNKQNQSEVTNKNGGRTKDSESRSENEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 463 | 479 | - | - | |
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Stsc151103g00008 | 548 | ProSiteProfiles | BRX domain profile. | 475 | 530 | IPR013591 | - | |
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 233 | 247 | - | - | |
| Stsc151103g00008 | 548 | SUPERFAMILY | FYVE/PHD zinc finger | 100 | 171 | IPR011011 | - | |
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 278 | 315 | - | - | |
| Stsc151103g00008 | 548 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 474 | 529 | IPR013591 | - | |
| Stsc151103g00008 | 548 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 49 | 96 | IPR000408 | - | |
| Stsc151103g00008 | 548 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 1 | 385 | - | - | |
| Stsc151103g00008 | 548 | Pfam | Transcription factor BRX N-terminal domain | 361 | 395 | IPR027988 | - | |
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 423 | 479 | - | - | |
| Stsc151103g00008 | 548 | Pfam | FYVE zinc finger | 100 | 166 | IPR000306 | GO:0046872 | |
| Stsc151103g00008 | 548 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 173 | IPR013083 | - | |
| Stsc151103g00008 | 548 | CDD | FYVE_like_SF | 109 | 162 | - | - | |
| Stsc151103g00008 | 548 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 1 | 47 | IPR000408 | - | |
| Stsc151103g00008 | 548 | SMART | fyve_4 | 98 | 167 | IPR000306 | GO:0046872 | |
| Stsc151103g00008 | 548 | Coils | Coil | 366 | 386 | - | - | |
| Stsc151103g00008 | 548 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 106 | 174 | - | - | |
| Stsc151103g00008 | 548 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 104 | 166 | IPR017455 | - | |
| Stsc151103g00008 | 548 | Coils | Coil | 310 | 351 | - | - | |
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 423 | 462 | - | - | |
| Stsc151103g00008 | 548 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 48 | 99 | IPR000408 | - | |
| Stsc151103g00008 | 548 | Pfam | Unstructured region between BRX_N and BRX domain | 404 | 468 | - | - | |
| Stsc151103g00008 | 548 | Gene3D | - | 1 | 111 | IPR009091 | - | |
| Stsc151103g00008 | 548 | SUPERFAMILY | RCC1/BLIP-II | 1 | 100 | IPR009091 | - | |
| Stsc151103g00008 | 548 | MobiDBLite | consensus disorder prediction | 211 | 247 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151103g00008 | Stsc-Chr151103 | 79503 | 82576 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151103g00008 | 370 | 539 | Major Intrinsic Protein MIP | AT1G31880 | 33.516 | 2.01e-18 | 85.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151103g00008 | - | - | gmx:100802464 | 936.406 |