Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151103g00005 ATGGAAGAATCAGGAGAGTTGCAATCGGATGAAAATAAAGCCTCTACAGAGAAGAAAAATAAAAGAAGGCTGAAAACACCTTCTCAGGTTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCACTGAGGAAATGAAACAAGAGCTTGCTGAGGAGTTAGGGTTGACAGAGAAGCAAATTTCCGGATGGTTTTGCCACAGAAGGTTAAAAGACAAACGGTTGTTGAAAGATGAAGCAGTTGGTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGACCGTGGCAGTGGACGGCAAGATTCATGCGGAAGCAGTAAACATGGTGATTACCGTTATCTGGATCCGAAAGAGGTAGAAAGTCATGGCGTATACAATCGTGATTTGTCAGTTCCGGATATGAACTATGGACATAGGAACCAGTATACAGAAAACGCAAGCGAAATGGATGATACATCATCTGATAGTGGCTCATTTTTGCAAGATCGCATGTTTCCTCAAGGCCAGGATCCATACGATATGGATCCTTCAAGGTATCCAACTCACAATGGAGCTCTTCCACCCCTTAATCCCAAGGGTGGAAACATCGGATATAAACCATCGGGATATTTGAAAGTCAAGGGCGAGATTGAGCATGCTGCTATAACCGCCGTAAAGAAGCAGTTAGGAAGGCATTATCATGAAGATGGTCCACTCCTTGGTATAGAATTTGATCAACCTCCCCCAGGGGCATTTGAAGGCCAAACTGCAGATCCAGTTCACGAACCATATACTATTGCAAATCCTGCACTTCTTACTTCACCAGAAATCTCCACTGGAAAAAGGCAATCCAATGTTAGCACAAAATATGATTCGTATGCTAAATTTAGTTCCAAAGATTCACATATGGAAGGGGTTGAATTTGGATCCTTGCATGACTCTGATTTCCCGGATAAGCAGGATAAGAAAGCCCGCCAGAGTGTTAAACAGAGACAACCGGTTTATGGTTACGCCAACCATCTTCCTGGCCGGAACTCCTCGGATTTGTATGATGACTCTAATGGAGAAGCATCTGCTTATAATAGCACTAAAGTTTCTAGTATCCTTGCAAAGCATGGTATCGAGGGGATGAGATCCGATTCTGCTTCCAACCATAGTGATCACTATGAAGAGAACCTCATGGTTAAGCAGACAGACTTGATGCAAGGCTATGATAGCATCAATCCGAAAAATGTGAAAAGAAGTGAACTTGTTAAACCTAAGCCCGCAAATTCAATCCGTCATCCTCGAATGCCCGTGGATGCTGAAGATAGGGGGCTACCTATGAGGGTGGAAGAGTTGCATCAGGTTGAGAGGAAGGTGAAAAAGCAATATCACGATTCTTATGGAGCAAGGATGCATCCAAATGAAATCACGGGTGCAAAACGAGCAAAAGTTGATCTGCATAAACAATTCAATCCAAAACAAGCACCTATTGCTGAGATAGAACAAAGGAAAAATCCGAGATCCACCGCAGAGATGCCGATGCCATTTAGCTTTAGTGAGGATGAATCCCTCGGCCTCGATTCCAGTTCCTCACTGGATTAA 1572 0.4338 MEESGELQSDENKASTEKKNKRRLKTPSQVMALEKFYNEHKYPTEEMKQELAEELGLTEKQISGWFCHRRLKDKRLLKDEAVGNGRQDRSSGVIQDRGSGRQDSCGSSKHGDYRYLDPKEVESHGVYNRDLSVPDMNYGHRNQYTENASEMDDTSSDSGSFLQDRMFPQGQDPYDMDPSRYPTHNGALPPLNPKGGNIGYKPSGYLKVKGEIEHAAITAVKKQLGRHYHEDGPLLGIEFDQPPPGAFEGQTADPVHEPYTIANPALLTSPEISTGKRQSNVSTKYDSYAKFSSKDSHMEGVEFGSLHDSDFPDKQDKKARQSVKQRQPVYGYANHLPGRNSSDLYDDSNGEASAYNSTKVSSILAKHGIEGMRSDSASNHSDHYEENLMVKQTDLMQGYDSINPKNVKRSELVKPKPANSIRHPRMPVDAEDRGLPMRVEELHQVERKVKKQYHDSYGARMHPNEITGAKRAKVDLHKQFNPKQAPIAEIEQRKNPRSTAEMPMPFSFSEDESLGLDSSSSLD 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 78 171 - -
Stsc151103g00005 523 Gene3D - 8 91 - -
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 400 429 - -
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 88 106 - -
Stsc151103g00005 523 SMART HOX_1 18 80 IPR001356 GO:0003677
Stsc151103g00005 523 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 1 32 - -
Stsc151103g00005 523 CDD homeodomain 19 75 IPR001356 GO:0003677
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 7 24 - -
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 138 165 - -
Stsc151103g00005 523 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Stsc151103g00005 523 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 519 - -
Stsc151103g00005 523 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 303 323 - -
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 303 350 - -
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 107 126 - -
Stsc151103g00005 523 MobiDBLite consensus disorder prediction 479 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151103g00005 Stsc-Chr151103 62291 67087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151103g00005 3 523 Homeobox Transcription Factor Family AT4G03250 39.483 5.20e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc151103g00005 Homeodomain 5.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151103g00005 - - gmx:100803515 727.243