Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151103g00001 ATGTGGCCTTCAAGATCCTCCCTCAACTACGGACTCGCCCCTCCCGATATTCCTCCTCACGGAATGGTCGGACTCCGAGATGTCTTCGTCGTCGCTCCGGCATCCTCCTTCCACCACCACCACCACCACCACAACGACGCCGCCGTTTTGTCCTCCTCCGATCTCCACCATCTCGGGAGCAACAATTCCTCTAACAACCCCGCAACTGCACTTGGCGTCGGAGTCGGCGTCGGCGTCATCCCTCTCCTCACCGCAACGCCGTGTCTCGATCAGGAAAATATCCTCACTGGAAGAGCAAGAACCGCCGCATCGGGAAGCAGCGGCGGCGGAATTCAATTCTGGCAGGAACAACAACCTCATCATCATCATCAATACCTGAAGAAGCCGGGTCTTATAGACCACAATATCGGTGCGAATTTAATCCCCGGTGGCGGTAGCGGCGGCAGCGGAAGCGGCGACGGCGGTGGATCCAACAGCGGAGGCGGAACAACCACGTGTCAAGATTGTGGGAACCAAGCGAAGAAGGATTGTGCGCATAGAAGGTGCAGAACTTGCTGCAAGAGTAGGGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCCGCTGCTCGCCGGAGGGAGCGCCAGCTCATCACAGGCACGACGGCGACCACGGCTGCTGCCGTTGCCGGTTCCAGCGGTTCAACTTCCGGCGCCAAGAAACCTAGGCTGATTTCTTCCCAAACAACAACGAATTCTCACACTTCAACTTCCAACACCACTCCTCCTCGAAGCTTCGACACTTCCTCAAGCCATCAAGATGCGGGTTTCAAGGAGAAATTGCCGGGTCAAATAAGAGCGCCTGCAGTATTCAAGTGTGTGAGAGTGACGTCAGTGGACGATGAACAAGATGAGTATGCATATCAAGCCGTTGTGAAGATCGGTGGTCGTGTCTTCAAAGGCTTTCTCTATGATCAAGGCCATCAGAATCATAGTAATAGAGATAACAATAATAACAGTAATAATAATAATGTGTATCCTAATCTTTCTGAGCTCCATTTAGGTGGCGGTGGAGGTGGCGGCGGCGGTGGTAGAAATGGGGTTTCATCATCCTCACCAATGCTTGATCCTTCTGATGTTTATGCAGCTTCAGGTGGTGGTGGTGGTGTTGGGGGGTTACTGGGAGGTTCAACCTATGGTAATCCAATAAATTGA 1200 0.5317 MWPSRSSLNYGLAPPDIPPHGMVGLRDVFVVAPASSFHHHHHHHNDAAVLSSSDLHHLGSNNSSNNPATALGVGVGVGVIPLLTATPCLDQENILTGRARTAASGSSGGGIQFWQEQQPHHHHQYLKKPGLIDHNIGANLIPGGGSGGSGSGDGGGSNSGGGTTTCQDCGNQAKKDCAHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLITGTTATTAAAVAGSSGSTSGAKKPRLISSQTTTNSHTSTSNTTPPRSFDTSSSHQDAGFKEKLPGQIRAPAVFKCVRVTSVDDEQDEYAYQAVVKIGGRVFKGFLYDQGHQNHSNRDNNNNSNNNNVYPNLSELHLGGGGGGGGGGRNGVSSSSPMLDPSDVYAASGGGGGVGGLLGGSTYGNPIN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151103g00001 399 Pfam Domain of unknown function (DUF702) 163 324 - -
Stsc151103g00001 399 MobiDBLite consensus disorder prediction 215 276 - -
Stsc151103g00001 399 MobiDBLite consensus disorder prediction 136 161 - -
Stsc151103g00001 399 NCBIfam putative zinc finger domain, LRP1 type 165 207 IPR006510 -
Stsc151103g00001 399 MobiDBLite consensus disorder prediction 321 376 - -
Stsc151103g00001 399 MobiDBLite consensus disorder prediction 321 344 - -
Stsc151103g00001 399 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 35 378 IPR007818 GO:0003700|GO:0006355
Stsc151103g00001 399 MobiDBLite consensus disorder prediction 215 267 - -
Stsc151103g00001 399 NCBIfam LRP1 C-terminal domain 276 322 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151103g00001 Stsc-Chr151103 4659 7242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151103g00001 2 375 C2H2 Transcription Factor Family AT5G12330 49.215 5.93e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc151103g00001 DUF702 7.5e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151103g00001 - - qsu:111988887 415.616