Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151102g00006 ATGGGGATTCAGTGCTCCAGATTCATTCCATGTTGTATGAATTCACAAGTTAAGGCATCTGTTCCTGAAACTCCAGATGCTGAAAATGAGGACACAAGTGAGGTCAGTAACTGGCCTATGTTCTGTGAATTTTCGCTCGAGCAACTTAAGAATGCTACGTCTGGTTTCGCTGTTGAGAATATTGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAGCTGGATAATCAAATGAGGATTGCTGTTAAACGATTCAACAGAAATGCTTGGCCTGATTCTCGCCAGTTTTTGGAGGAAGCAAGATCAGTTGGTCAGCTTCGGAACCATAGACTAGCAAATTTGCTTGGTTGTTGTTGTGAAGGAGATGAAAGGTTGCTTGTGGCTGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTCCATTGGGAAACACAACCCATGAAATGGGCAATGCGGCTAAGAGTTGTTCTACATCTTGCACAAGCTCTGGAGTACTGTACAAGTAAAGGGCGAGCACTCTATCACGACCTTAATGCATATAGGGTTCTATTTGATGAGGATGGTAATCCCAGGCTTTCGAGTTTCGGCCTCATGAAAAATAGTAGGGATGGGAAAAGTTACAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACCGGTAGAGTAACGCCGGAAAGTGTAATTTATAGCTTTGGTACTCTTTTGCTGGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCATGCCCTTGATTTGATTCGCGACAGAAATCTTCAGATGCTAACAGATTCTTGTCTGGAAGGACAATTTTCTGATGATGATGGGACTGAGTTGGTGCGGCTAGCATCACGGTGTTTACAGTACGAACCTCGAGAACGGCCTAATCCGAAATCATTAGTAGCTGCGTTGGCTCCTCTTCAAAAGGAAACAGAGGTTCCTTCACATGTCTTGATGGGAATTCCGCATAGTGCTGCGACTTTTTCTTCATTGTCCCCACTTGGTGAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAAACTTGGCTATAAAGATGACGAAGGAGTGGCAAATGAGTTATCATTCCAGATGTGGACTGATCAAATGCAACAGACATTAAATTGTAAGAAAAAGGGAGACGTTGCTTTCCGGCAGAAAGATTTTAAACTAGCAATTGAATGCTACACACAGTTCATTGATGGTGGAACGATGGTTTCTCCTACGGTCTATGCACGGCGCAGTCTGTGTTATCTCATTAGCGACATGTATCAGGAAGCGCTGAACGATGCAGTGCAAACAAGAGTGATTTCCCCTGTATGGCACATTGCATTTTATCTTGAATCTGTTGCACTTGGAGGACTTGGAATGGAGAATGAAGCACAAGTAGCAATTAAAGAAGCTACAACACTTGAAGCTAAGAGGAGTTCAAATGCTAAACAAAAGTGA 1479 0.4307 MGIQCSRFIPCCMNSQVKASVPETPDAENEDTSEVSNWPMFCEFSLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLDNQMRIAVKRFNRNAWPDSRQFLEEARSVGQLRNHRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHVLMGIPHSAATFSSLSPLGEACSRKDLTAIHEVLEKLGYKDDEGVANELSFQMWTDQMQQTLNCKKKGDVAFRQKDFKLAIECYTQFIDGGTMVSPTVYARRSLCYLISDMYQEALNDAVQTRVISPVWHIAFYLESVALGGLGMENEAQVAIKEATTLEAKRSSNAKQK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151102g00006 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 18 486 IPR045845 GO:0004672|GO:0009742
Stsc151102g00006 492 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Stsc151102g00006 492 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Stsc151102g00006 492 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Stsc151102g00006 492 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Stsc151102g00006 492 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151102g00006 492 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Stsc151102g00006 492 SUPERFAMILY Protein kinase-like (PK-like) 33 319 IPR011009 -
Stsc151102g00006 492 SUPERFAMILY TPR-like 384 482 IPR011990 GO:0005515
Stsc151102g00006 492 FunFam probable serine/threonine-protein kinase At4g35230 381 490 - -
Stsc151102g00006 492 Gene3D Tetratricopeptide repeat domain 380 492 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151102g00006 Stsc-Chr151102 32323 36420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151102g00006 22 313 Glycoside Hydrolase AT3G07070 33.436 3.07e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc151102g00006 PK_Tyr_Ser-Thr 4.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151102g00006 K14500 - gmx:100799260 905.975