Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151102g00004 ATGGATCGTGGGGACCAAATGGCCTTGTCTGCTTCTGCATCTTATTATATGCAGAGAGGACTGCCTGTGCCTGGTTCTGTAACACAGCAAGCAGAGTTGCACAACTCCCCTAGCAATAGCATGCTTCCATTTCAATCAAGCATTGGTGGAGAAACAGTCAAAAGGAAGAGAGGTAGGCCTAGGAAGTATGGGCCAGATGGGACCGTGTCACTCGCATTGACTCCAACGCCAGCTACTCATCCTGGAACCATCACACAACCAGGCCAGAAACGGGGTAGAGGTCGCCCCCCAGGGTCTGGCAAGAAACAGCAGCTGGCTTCTCTTGGTGAATTGATGTCTGGTACGGCTGGGATGGGTTTCACTCCTCATATCATCACCGTTGCTGTTGGAGAAGACATTGCAACCAAAGTTATGGCATTTTCTCAGCAAGGGCCTAGAGCAATTTGTATTATGGCAGCCACTGGTGCTGTCTCTACTGTGACACTTGGACAACCTTCAACTTCTGGTGGCTCTGTCACATACGAGGGCCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTACTTACCGATAGTGGTGGATCCCGCAATCCATCCGGGGGGCTCAGTGTTTCCCTTGCTAGTCCTGACGGCCGTGTTATTGGTGGAGGAGTTGGCGGAGTGCTTATTGCTGCTTCTCCAGTTCAGGTTGTAGTTGGGAGCTTTGTTTGGGGCGAAGCAAAGGCGAAGAAACAGAAAAAAGAAGCTATGGAGTCAGATCATCAGACAGTTCATAATCCGGTGACAATGAACAACATTTCCTCGAATCAGAATCAAAATCTTACTCCAACCTCGTCTCTAAGTCCATGGCCTAGTTCGCGTCCAATGGCGCATATTGACATCGATTTAATGCGTGGGTGA 900 0.4944 MDRGDQMALSASASYYMQRGLPVPGSVTQQAELHNSPSNSMLPFQSSIGGETVKRKRGRPRKYGPDGTVSLALTPTPATHPGTITQPGQKRGRGRPPGSGKKQQLASLGELMSGTAGMGFTPHIITVAVGEDIATKVMAFSQQGPRAICIMAATGAVSTVTLGQPSTSGGSVTYEGRFEILCLSGSYLLTDSGGSRNPSGGLSVSLASPDGRVIGGGVGGVLIAASPVQVVVGSFVWGEAKAKKQKKEAMESDHQTVHNPVTMNNISSNQNQNLTPTSSLSPWPSSRPMAHIDIDLMRG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151102g00004 299 FunFam AT-hook motif nuclear-localized protein 1-like 122 253 - -
Stsc151102g00004 299 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Stsc151102g00004 299 SMART AT_hook_2 54 66 IPR017956 GO:0003677
Stsc151102g00004 299 CDD DUF296 121 235 IPR005175 -
Stsc151102g00004 299 Gene3D - 122 258 - -
Stsc151102g00004 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 278 IPR039605 GO:0003680
Stsc151102g00004 299 MobiDBLite consensus disorder prediction 26 47 - -
Stsc151102g00004 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 122 236 IPR005175 -
Stsc151102g00004 299 MobiDBLite consensus disorder prediction 259 299 - -
Stsc151102g00004 299 MobiDBLite consensus disorder prediction 26 105 - -
Stsc151102g00004 299 MobiDBLite consensus disorder prediction 259 285 - -
Stsc151102g00004 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 241 - -
Stsc151102g00004 299 ProSiteProfiles PPC domain profile profile. 116 264 IPR005175 -
Stsc151102g00004 299 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151102g00004 Stsc-Chr151102 17827 20291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151102g00004 1 299 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.667 9.08e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151102g00004 - - gmx:100799791 401.364