Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151100g00021 ATGGGAGGAGGAGAGAAGAAGAGAATGGAGAAGCTAAAGAAGAAGTCAAAATCATCAGGAGGCTTCGAGTCTCTGAATCTAAACCCAAATGTATTCAAAGCAATCAAACGCAAAGGCTACAAAGTCCCCACTCCAATTCAAAGGAAGACCATGCCTCTCATCCTCTCCGGCCACGACGTCGTCGCCATGGCCCGCACCGGTTCCGGCAAAACGGCAGCGTTTCTTGTCCCAATGCTCCACCGCCTCAACCAGCATGTCCCTCAGGCCGGTGTCAGAGCCCTCATATTGTCCCCTACAAGGGACTTGGCCCTTCAAACCCTAAAATTCACCAAAGAGCTTGGTCACTTCACTGATCTTAGGGTTAGTTTGTTAGTTGGTGGAGACAGCATGGAGAGCCAGTTTGAGGAACTGGCTCAGAGCCCTGACGTTATAATTGCCACCCCTGGTAGGCTTATGCACCATTTGTCTGAGGTAGACGACATGTCGTTGCGCACCGTTGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTTGGTATGGGTTTTGCTGAGCAATTGCACCAGATTCTTTCGCAGCTCGGCGAGAATCGCCAGACGCTGTTGTTTAGCGCTACTATGCCCAGTGCGCTTGCGGAGTTCGCGAAGGCCGGCCTGCGAGATCCTCAGCTTGTTAGGCTTGATTTGGAGACAAAAATTAGCCCTGATTTGAAGATTGTGTTTTTTACTTTGAGGCAGGAAGAGAAGTATGCTGCATTGCTCTATTTGGTTAGGGAACGGATCAGTTCGGATCAGCAGACTTTGATTTTTGTATCCACAAAACACCATGTTGAGTTTTTGAATATATTGTTTAGGGAAGAAGGGATTGAACCATCTGTGTGTTATGGTGACATGGATCAAGATGCTAGAAAAATACATGTATCAAGGTTTAGGTCAAGGAAAACAATGCTGTTGATTGTGACTGATGTTGCGGCTCGTGGCATTGATATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAGATATTTGTTCATCGTGTTGGAAGGGCTGCAAGGGCTGGTCGTACCGGCACTGCTTATTCCTTTGTGACATCGGAGGATATGGCTTACCTATTGGATCTTCATTTGTTTCTGTCGAAGCCGATAGAAGCTGCTCCCACCGAAGAAGAGGTCTTGCAGAATATGGATGGAGTGATGTCGAAAATTGAACAGGCAATGGCAAATGGAGAAACTGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTCCGATAGAGTTAGGGAAATTATTGATACTAATGCAGAACTGGAGTCATTGCAGCGAACCTGCAATAATGCATTCCGTTTATATATGAAGACAAAACCCTTGCCATCCAAAGAGTCTATTAGAAGAGTAAAGGATTTGCCACGTGAGGGTCTGCATCCGATGTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTTGCATTTTCAGAGCACTTGAAAAAGTTTAGGCCAAAGCAGACTATCTTGGAGGCTGAAGGGGAAGCAGCTAAATCAAAGCATGTAAAGGGTCCTTCTGGTCAATGGGTTGATGTGATGAAAAGGAAGAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAGTCTAAGAGTACCAAGGAAAAGGAGGAAATTCAACCAGAAGATATTCCTTCCATGGAGAAAGGGAGAAAAGCATCTGGCTCTAAGAGAAAGCCAGAGAGTTTTGTGGATGAGGAATACTATATAAGTTCAGTACCTAAAAATCAACACATGGAGGCAGGCCTTTCTGTGAAAGCTAATGAAGAATTTGCCGCAAACAGATTGGATTCTGCTGTCTTAGATCTAGTTGCAGATGATAGTACTGGCATTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACAGGCATATATAAGAAGTGGAAAGAGCGTTCACACACTAAGGTATCTCTTAAGTGGACAAATAACGATGGTGATGCTCAAGAATCCACAGGCTTTAAAGGATCTTACAGAGGAAGAGGTAAGAATTTCAAAGGCGGCAGTAAGAGGCAGCAATCAATGCCCAATTCTCATGTTCGTTCAGAGATCAAAGATTTTGATCAAATTCGAAAGGAGAGGCAGAAAAAGGCTGAAAGGATTTCGCATTTGAAGAGCAAGGCAGGAGCAAAGGGTAAGAAATTTGGTAAAAATGGAAAGAAAAGAAGAGCTAAATAG 2343 0.4379 MGGGEKKRMEKLKKKSKSSGGFESLNLNPNVFKAIKRKGYKVPTPIQRKTMPLILSGHDVVAMARTGSGKTAAFLVPMLHRLNQHVPQAGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDVIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLGENRQTLLFSATMPSALAEFAKAGLRDPQLVRLDLETKISPDLKIVFFTLRQEEKYAALLYLVRERISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIEAAPTEEEVLQNMDGVMSKIEQAMANGETVYGRFPQTVLDLVSDRVREIIDTNAELESLQRTCNNAFRLYMKTKPLPSKESIRRVKDLPREGLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHVKGPSGQWVDVMKRKRAIHENIINLVHEQQSKSTKEKEEIQPEDIPSMEKGRKASGSKRKPESFVDEEYYISSVPKNQHMEAGLSVKANEEFAANRLDSAVLDLVADDSTGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHTKVSLKWTNNDGDAQESTGFKGSYRGRGKNFKGGSKRQQSMPNSHVRSEIKDFDQIRKERQKKAERISHLKSKAGAKGKKFGKNGKKRRAK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151100g00021 780 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 224 IPR014001 -
Stsc151100g00021 780 SMART DBP10CT_2 625 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Stsc151100g00021 780 CDD DEADc_DDX54 20 225 IPR033517 -
Stsc151100g00021 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 376 IPR027417 -
Stsc151100g00021 780 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
Stsc151100g00021 780 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 10 690 - -
Stsc151100g00021 780 Gene3D - 237 473 IPR027417 -
Stsc151100g00021 780 MobiDBLite consensus disorder prediction 736 761 - -
Stsc151100g00021 780 SMART ultradead3 39 239 IPR014001 -
Stsc151100g00021 780 Pfam DEAD/DEAH box helicase 44 211 IPR011545 GO:0003676|GO:0005524
Stsc151100g00021 780 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 248 397 IPR001650 -
Stsc151100g00021 780 MobiDBLite consensus disorder prediction 687 780 - -
Stsc151100g00021 780 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151100g00021 780 MobiDBLite consensus disorder prediction 762 780 - -
Stsc151100g00021 780 MobiDBLite consensus disorder prediction 552 582 - -
Stsc151100g00021 780 CDD SF2_C_DEAD 243 367 - -
Stsc151100g00021 780 MobiDBLite consensus disorder prediction 547 582 - -
Stsc151100g00021 780 SMART helicmild6 277 358 IPR001650 -
Stsc151100g00021 780 Pfam Helicase conserved C-terminal domain 248 358 IPR001650 -
Stsc151100g00021 780 Gene3D - 4 227 IPR027417 -
Stsc151100g00021 780 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151100g00021 Stsc-Chr151100 108121 113246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151100g00021 22 391 Eukaryotic Initiation Factors Gene Family AT1G72730 33.065 1.11e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151100g00021 K14808 - gmx:100806274 1279.62