Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151100g00021 | ATGGGAGGAGGAGAGAAGAAGAGAATGGAGAAGCTAAAGAAGAAGTCAAAATCATCAGGAGGCTTCGAGTCTCTGAATCTAAACCCAAATGTATTCAAAGCAATCAAACGCAAAGGCTACAAAGTCCCCACTCCAATTCAAAGGAAGACCATGCCTCTCATCCTCTCCGGCCACGACGTCGTCGCCATGGCCCGCACCGGTTCCGGCAAAACGGCAGCGTTTCTTGTCCCAATGCTCCACCGCCTCAACCAGCATGTCCCTCAGGCCGGTGTCAGAGCCCTCATATTGTCCCCTACAAGGGACTTGGCCCTTCAAACCCTAAAATTCACCAAAGAGCTTGGTCACTTCACTGATCTTAGGGTTAGTTTGTTAGTTGGTGGAGACAGCATGGAGAGCCAGTTTGAGGAACTGGCTCAGAGCCCTGACGTTATAATTGCCACCCCTGGTAGGCTTATGCACCATTTGTCTGAGGTAGACGACATGTCGTTGCGCACCGTTGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTTGGTATGGGTTTTGCTGAGCAATTGCACCAGATTCTTTCGCAGCTCGGCGAGAATCGCCAGACGCTGTTGTTTAGCGCTACTATGCCCAGTGCGCTTGCGGAGTTCGCGAAGGCCGGCCTGCGAGATCCTCAGCTTGTTAGGCTTGATTTGGAGACAAAAATTAGCCCTGATTTGAAGATTGTGTTTTTTACTTTGAGGCAGGAAGAGAAGTATGCTGCATTGCTCTATTTGGTTAGGGAACGGATCAGTTCGGATCAGCAGACTTTGATTTTTGTATCCACAAAACACCATGTTGAGTTTTTGAATATATTGTTTAGGGAAGAAGGGATTGAACCATCTGTGTGTTATGGTGACATGGATCAAGATGCTAGAAAAATACATGTATCAAGGTTTAGGTCAAGGAAAACAATGCTGTTGATTGTGACTGATGTTGCGGCTCGTGGCATTGATATTCCGTTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAGATATTTGTTCATCGTGTTGGAAGGGCTGCAAGGGCTGGTCGTACCGGCACTGCTTATTCCTTTGTGACATCGGAGGATATGGCTTACCTATTGGATCTTCATTTGTTTCTGTCGAAGCCGATAGAAGCTGCTCCCACCGAAGAAGAGGTCTTGCAGAATATGGATGGAGTGATGTCGAAAATTGAACAGGCAATGGCAAATGGAGAAACTGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTCCGATAGAGTTAGGGAAATTATTGATACTAATGCAGAACTGGAGTCATTGCAGCGAACCTGCAATAATGCATTCCGTTTATATATGAAGACAAAACCCTTGCCATCCAAAGAGTCTATTAGAAGAGTAAAGGATTTGCCACGTGAGGGTCTGCATCCGATGTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTTGCATTTTCAGAGCACTTGAAAAAGTTTAGGCCAAAGCAGACTATCTTGGAGGCTGAAGGGGAAGCAGCTAAATCAAAGCATGTAAAGGGTCCTTCTGGTCAATGGGTTGATGTGATGAAAAGGAAGAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAGTCTAAGAGTACCAAGGAAAAGGAGGAAATTCAACCAGAAGATATTCCTTCCATGGAGAAAGGGAGAAAAGCATCTGGCTCTAAGAGAAAGCCAGAGAGTTTTGTGGATGAGGAATACTATATAAGTTCAGTACCTAAAAATCAACACATGGAGGCAGGCCTTTCTGTGAAAGCTAATGAAGAATTTGCCGCAAACAGATTGGATTCTGCTGTCTTAGATCTAGTTGCAGATGATAGTACTGGCATTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACAGGCATATATAAGAAGTGGAAAGAGCGTTCACACACTAAGGTATCTCTTAAGTGGACAAATAACGATGGTGATGCTCAAGAATCCACAGGCTTTAAAGGATCTTACAGAGGAAGAGGTAAGAATTTCAAAGGCGGCAGTAAGAGGCAGCAATCAATGCCCAATTCTCATGTTCGTTCAGAGATCAAAGATTTTGATCAAATTCGAAAGGAGAGGCAGAAAAAGGCTGAAAGGATTTCGCATTTGAAGAGCAAGGCAGGAGCAAAGGGTAAGAAATTTGGTAAAAATGGAAAGAAAAGAAGAGCTAAATAG | 2343 | 0.4379 | MGGGEKKRMEKLKKKSKSSGGFESLNLNPNVFKAIKRKGYKVPTPIQRKTMPLILSGHDVVAMARTGSGKTAAFLVPMLHRLNQHVPQAGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDVIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLGENRQTLLFSATMPSALAEFAKAGLRDPQLVRLDLETKISPDLKIVFFTLRQEEKYAALLYLVRERISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIEAAPTEEEVLQNMDGVMSKIEQAMANGETVYGRFPQTVLDLVSDRVREIIDTNAELESLQRTCNNAFRLYMKTKPLPSKESIRRVKDLPREGLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHVKGPSGQWVDVMKRKRAIHENIINLVHEQQSKSTKEKEEIQPEDIPSMEKGRKASGSKRKPESFVDEEYYISSVPKNQHMEAGLSVKANEEFAANRLDSAVLDLVADDSTGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHTKVSLKWTNNDGDAQESTGFKGSYRGRGKNFKGGSKRQQSMPNSHVRSEIKDFDQIRKERQKKAERISHLKSKAGAKGKKFGKNGKKRRAK | 780 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151100g00021 | 780 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 51 | 224 | IPR014001 | - | |
Stsc151100g00021 | 780 | SMART | DBP10CT_2 | 625 | 687 | IPR012541 | GO:0003723|GO:0003724|GO:0005524|GO:0005634 | |
Stsc151100g00021 | 780 | CDD | DEADc_DDX54 | 20 | 225 | IPR033517 | - | |
Stsc151100g00021 | 780 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 90 | 376 | IPR027417 | - | |
Stsc151100g00021 | 780 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 20 | 48 | IPR014014 | GO:0003724 | |
Stsc151100g00021 | 780 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 10 | 690 | - | - | |
Stsc151100g00021 | 780 | Gene3D | - | 237 | 473 | IPR027417 | - | |
Stsc151100g00021 | 780 | MobiDBLite | consensus disorder prediction | 736 | 761 | - | - | |
Stsc151100g00021 | 780 | SMART | ultradead3 | 39 | 239 | IPR014001 | - | |
Stsc151100g00021 | 780 | Pfam | DEAD/DEAH box helicase | 44 | 211 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc151100g00021 | 780 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 248 | 397 | IPR001650 | - | |
Stsc151100g00021 | 780 | MobiDBLite | consensus disorder prediction | 687 | 780 | - | - | |
Stsc151100g00021 | 780 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Stsc151100g00021 | 780 | MobiDBLite | consensus disorder prediction | 762 | 780 | - | - | |
Stsc151100g00021 | 780 | MobiDBLite | consensus disorder prediction | 552 | 582 | - | - | |
Stsc151100g00021 | 780 | CDD | SF2_C_DEAD | 243 | 367 | - | - | |
Stsc151100g00021 | 780 | MobiDBLite | consensus disorder prediction | 547 | 582 | - | - | |
Stsc151100g00021 | 780 | SMART | helicmild6 | 277 | 358 | IPR001650 | - | |
Stsc151100g00021 | 780 | Pfam | Helicase conserved C-terminal domain | 248 | 358 | IPR001650 | - | |
Stsc151100g00021 | 780 | Gene3D | - | 4 | 227 | IPR027417 | - | |
Stsc151100g00021 | 780 | Pfam | DBP10CT (NUC160) domain | 625 | 686 | IPR012541 | GO:0003723|GO:0003724|GO:0005524|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151100g00021 | Stsc-Chr151100 | 108121 | 113246 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151100g00021 | 22 | 391 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 33.065 | 1.11e-59 | 206 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151100g00021 | K14808 | - | gmx:100806274 | 1279.62 |