Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151099g00005 ATGGAGCCTGGTGAGGAAATTTATCCAGAATGGAGTTCCCTTAGTGGATCATACACAGCCGAGGAAGCTGATTTCATGAACCAGTTTCTTAGCAACAGCTCATACACACAACAGCTGCATGCAAATTTGAATGCAGGAATTCCATCTGCATTATGGCATGATCATGCAGACATCGATAGCAGTTCATTTTATGCAGCAAATGCTTCTGATAATAGTAATCTTTTTAGTTTCTTACAAGGGCAGTTTAGTTCCACTGATTATAGCAGTAGTAATATGTTTCCAATTGTAAATAGTGACAACTTGAGTGATCCATTAACCAACACGGTGGATCCATCATTAAGCACATATACTGATAAAGAGTTAGGTGTAGATGTTATTGCTGATAAGAATGTACTAAGCGAACCGGTTTCTGAATCAGCCCAAGAGTGTATAAGCAGCAAGTTGGAGAAGCCAAGAAAAAGGTCTCGGAGTTCAACTGAGATACTAAAGAACAAGAAAAATGTTAAAACTACAAAGAAACCAAAATCTGCTTCCATTAACAGAATTAAAGAACATATATCTCCGGATCAGGAGGAAAACTTGAGCAGTTCCTGCTCAGAAGATGAGTTGAATACTTGTCATGAGCTAAATGGAGGAGAATCTTCAAGCTTGAACCTGAAATATTCTACAGGAAATGGCAAATCTAGATCTAGTAGAGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGGAAAAGAAGAGCAAGAATAAATGAAAGGTTGAGAATCTTACAAAACTTAGTGCCTAATGGAACCAAGGTGGATATCAGCACAATGCTTGAAGAAGCAGTCCAATATGTGAAATTTTTACAGCTCCAAATTAAGCTCTTGAGCTCTGATGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACTTCAATATTACCACAGCCAAACAAAACAATAATACCAGATATATAGCATAG 984 0.3801 MEPGEEIYPEWSSLSGSYTAEEADFMNQFLSNSSYTQQLHANLNAGIPSALWHDHADIDSSSFYAANASDNSNLFSFLQGQFSSTDYSSSNMFPIVNSDNLSDPLTNTVDPSLSTYTDKELGVDVIADKNVLSEPVSESAQECISSKLEKPRKRSRSSTEILKNKKNVKTTKKPKSASINRIKEHISPDQEENLSSSCSEDELNTCHELNGGESSSLNLKYSTGNGKSRSSRGSATDPQSIYARKRRARINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDFNITTAKQNNNTRYIA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151099g00005 327 MobiDBLite consensus disorder prediction 145 167 - -
Stsc151099g00005 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Stsc151099g00005 327 Pfam Helix-loop-helix DNA-binding domain 244 284 IPR011598 GO:0046983
Stsc151099g00005 327 MobiDBLite consensus disorder prediction 138 243 - -
Stsc151099g00005 327 FunFam Basic helix-loop-helix transcription factor 235 292 - -
Stsc151099g00005 327 CDD bHLH_AtIND_like 235 297 - -
Stsc151099g00005 327 Gene3D - 232 291 IPR036638 GO:0046983
Stsc151099g00005 327 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 307 - -
Stsc151099g00005 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 300 IPR036638 GO:0046983
Stsc151099g00005 327 SMART finulus 240 289 IPR011598 GO:0046983
Stsc151099g00005 327 MobiDBLite consensus disorder prediction 191 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151099g00005 Stsc-Chr151099 37755 39166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151099g00005 6 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.155 1.72e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151099g00005 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151099g00005 - - ahf:112711907 426.787