Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151099g00004 ATGGAACCAGCTCAGTTGATTTCTGAAGAATGGGGCTCTCTTAGTGGACTATACACAGCTGAGGAAGCTGAATTCATGACTCAGCTTCTTGATGGTAACTATTCTGTCTCAGAGAAGCATTATTCTAGTGTTGGCAGCATGCCATCATCTTCTGCATTTTGGCCTGCCCATGAATCCACAAAAGTAGTGAGCTTGAAAGGAACCAACAGCAATTCTTATTTGCCTCCTTCACATATTGAAAATGCTAACTATCTGTGCTTCTCCCAAGGGAGTAGCTCCAGTACTGAGAATGGTAATATGTATTCCTATGATACTGCAACGAATTTCGATTCCATGTCCACCGATTTTTGTTTAGAAGGTGCCAAGTTTAGTCCACAGTGTAATGATAACTCGAGGGCGCAGATAAATGGAATCATTGATGAAGATGCTAAGATAGAGTGTGAAAGGATGGTTTTCGAGCCTGCAGAGAACTTTCAGAACCCGGCAAAAAGGCTTAGGAGCTCATCTGAGGTCCCAAGAAACACGAGGAATGTTAAATCGAGGAAGGAGAATCCAATTCCTTCTTCTTACACAAGCAACAGTGAAGAAGAGAAAAGCCCTGCAGCTCCCAAAAATAGAAGAAATAGCAGTGGTGCTGCCACAGATCCACAGAGCCTTTATGCAAGAAAAAGAAGAGAAAGGATAAATGAAAGATTGAGAATACTACAGACACTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCATTATGTGAAGTTCTTACAGCTCCAAATTAAGCTTCTAAGCTCTGATGATCTATGGATGTATGCTCCAATTGCTTACAATGGAATTAACATTGGACTAGACCTCTCCATTACTCCTCCAACTAAAGCAAGCTGA 900 0.42 MEPAQLISEEWGSLSGLYTAEEAEFMTQLLDGNYSVSEKHYSSVGSMPSSSAFWPAHESTKVVSLKGTNSNSYLPPSHIENANYLCFSQGSSSSTENGNMYSYDTATNFDSMSTDFCLEGAKFSPQCNDNSRAQINGIIDEDAKIECERMVFEPAENFQNPAKRLRSSSEVPRNTRNVKSRKENPIPSSYTSNSEEEKSPAAPKNRRNSSGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSITPPTKAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151099g00004 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 277 IPR036638 GO:0046983
Stsc151099g00004 299 FunFam Basic helix-loop-helix transcription factor 213 270 - -
Stsc151099g00004 299 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 284 - -
Stsc151099g00004 299 CDD bHLH_AtIND_like 213 275 - -
Stsc151099g00004 299 Gene3D - 215 270 IPR036638 GO:0046983
Stsc151099g00004 299 SMART finulus 218 267 IPR011598 GO:0046983
Stsc151099g00004 299 MobiDBLite consensus disorder prediction 158 223 - -
Stsc151099g00004 299 Pfam Helix-loop-helix DNA-binding domain 222 262 IPR011598 GO:0046983
Stsc151099g00004 299 MobiDBLite consensus disorder prediction 181 216 - -
Stsc151099g00004 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 261 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151099g00004 Stsc-Chr151099 34858 36078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151099g00004 207 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 92.683 2.14e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151099g00004 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151099g00004 - - adu:107467178 533.487