Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151098g00013 ATGTCGACGGTATACGTTTTGGAACCGCCGACGAAGGGGAAGGTGGTTGTCAACACCACGCGGGGCCCACTTGACATCGAGCTATGGCCGAAGGAAGCTCCCAAAGCTGTCAGGAACTTCGTTCAGCTTTGCATGGAAGGTTACTACGACAACACCATCTTCCACCGCATAATCAAGGACTTCCTTGTTCAGGGTGGTGACCCCACCGGCACCGGCACCGGTGGTGAGAGTATTTATGGGGATGTTTTCGCCGATGAGTTTCATTCGCGTCTAAAATTCAAGCACAGAGGATTGGTTGCAATGGCCAATGCTGGGCCACCTAATTCCAATGGGAGTCAGTTTTTCATAACCCTTGACCGTTGTGACTGGCTTGATCGGAAGCACACTATTTTTGGAAAGGTAACAGGAGATACAATGTATAATCTTTTAAGGCTAGGCGAAGTTGAAACTGATAAAAACGACCGGCCTTTAAATCCACCCCCAAAGATATTATCGGTTGAGGTATTATGGAACCCATTTGAAGATATTGTGCCAAGAAATCTTCAGAAACCTCCGACTAAAGCTACACCTGATACAGAAAATAAAGGTTCGAAGACAAAGGGTGTAAAAAAATTGAACTTGCTTTCGTTTGGGGAAGAGGCTGAAGAAGAAGAAAAGGAATTGGCATCAGTGAAGCAAAAAATTAAGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTTTGAGGGAAGAAACCAATGAAATGAGTAAAGCAACAAGGGATCTGCAGTTAACTGTAAGGGATGCACTAAAAACCAAGAAGGAAGAGCCTCAGAAAGATCTAGAAACCAGTAATATTGATTCTGGTGATGACGACGACGACAACGATGGCGATGAAGCAGATTTTGATGCAAGGATGCGCAGGCGAATACTGAAAAAGCGGAAGGAATTGGGTGACCTTCCTCCCAAGCCAAAGGTGAAAAATGGAAAATCCAGTCCAGATCGCCAGGATATGTCAGCAGCCAGGTCAAATGCTTCACGAGTGGTTGATGATGACGACGACGATGATGATAAACCGAGGGCGGAAAAGTTGTCCATAAAGAAGAAGGGAGTAGGGTCTGAAGCAAGAGCTGAACGTATTGCAAATGCTGATGCAGATTTGCAGCTATTGAATGAAGCTGAGAGAGGAAGACAGTTGCAGAAGCAGAAGAGACGCAGATTACAAGGGCGTGAAGATGATGTTCTTGCTAAACTCGAGAAATTCAAGAATTCCTTAGCAGCGAAGTCGGCACCCAAAGCCAGTGAATCTGCTGATGATGATAAAGAACTGTCTGACTGGAAAGCTGTTAGCTTAAAATTTGCCCCGAATTCTGGCAAGGACCGCATGTCTCGCAACGAAGACCCGAACGACTATGTTGTGCATGACCCTCTTTTGGAGAAAGGGAAAGAGAAGTTTAATAGGATGCAAGCCAAACAAAAGAGGCGAGAACGTGAGTGGGCTGGGAAATCCCTCACGTGA 1497 0.4562 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCMEGYYDNTIFHRIIKDFLVQGGDPTGTGTGGESIYGDVFADEFHSRLKFKHRGLVAMANAGPPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLNPPPKILSVEVLWNPFEDIVPRNLQKPPTKATPDTENKGSKTKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLREETNEMSKATRDLQLTVRDALKTKKEEPQKDLETSNIDSGDDDDDNDGDEADFDARMRRRILKKRKELGDLPPKPKVKNGKSSPDRQDMSAARSNASRVVDDDDDDDDKPRAEKLSIKKKGVGSEARAERIANADADLQLLNEAERGRQLQKQKRRRLQGREDDVLAKLEKFKNSLAAKSAPKASESADDDKELSDWKAVSLKFAPNSGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMQAKQKRREREWAGKSLT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 262 278 - -
Stsc151098g00013 498 Gene3D - 2 183 IPR029000 -
Stsc151098g00013 498 Coils Coil 383 403 - -
Stsc151098g00013 498 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 CDD cyclophilin_CeCYP16-like 8 179 - -
Stsc151098g00013 498 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 262 498 - -
Stsc151098g00013 498 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 351 374 - -
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 452 498 - -
Stsc151098g00013 498 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 219 IPR044666 -
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 177 204 - -
Stsc151098g00013 498 Coils Coil 207 234 - -
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 293 325 - -
Stsc151098g00013 498 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 426 440 - -
Stsc151098g00013 498 MobiDBLite consensus disorder prediction 398 412 - -
Stsc151098g00013 498 SUPERFAMILY Cyclophilin-like 14 183 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151098g00013 Stsc-Chr151098 133322 139715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151098g00013 9 173 U-box Gene Family AT5G67530 48.485 9.83e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151098g00013 K12737 - gmx:100793148 751.51