Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151097g00019 ATGGAGTGGAATGCTAAATCTCTTGGGCAATGGGATTGGGAGAACTTATACTCATTCAATACAAAGCCAACTGAAAATCCCAAGTTGCAACCAACAGATTGGAGCATGGAAGGAGATGGAGAAATCAATGTCGGGCTGATATATCCGTCTGGTAGTAGTGCTTGTTCTGGCTCTGAACTGATTCATGCTTCGTCAAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCGAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGTTCTCAAGATGACTCAACTGGTAAGAAAGAATTGTCAAAGGAAGAGCCGGTTGAAAATTCTCCAGCACCAGAGCCCTCTTCTGCCTCTGGTGAACCGCTGCTCACTCTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAAACCATCTTCCGTCGGCGTTCCTACTTCATCTTTGACTCATGGAAAGAAATGTAAGGCCAATAGTCAGAACCTACAACACCCAAGCTGCCAAGTGGAAGGCTGTGGTCTAGACCTCTCATCTGCTAAGGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAATCCCCTAGGGTGCTTATAGCTGGTTTCGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCATGGTCTATCAGAGTTTGATGATAAAAAGAGAAGCTGTAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCTGTCCAATTGAACACATCAGCTTTGTCTTCATCACCCTATGATGCGAGGCAACTAATGAATCCATTTGGTTATTCAAGAACTGCTACAAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTTCTCATGAGGCCTGCGAAAGCTTTCGACAAGATACCAAGTGTTGTCACTATGCTTTCTGATGGTTCTAGTGACCTTGCATCCAAAGGCATGGCAAGCAATGGTAATTATCCAGGGAAAGAAGACCCTATTAGCTCGTCCGATACCAACGCTGCACAAGATATCAGTCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACACATGCTACGACTCAGCGCTTCCCTCTCGCTTCATCACAGTATTGGCACCTTGATCAACAACCAGCAGCCAATCCCAACATGTGTGTCCCATTCTCAGATTCTGATAATAGCAATCGTTTCCAAGAGTTTCAAATGTTTAATGCTCCCTCCTTTGGTTCCGGTTATCCTTGCAACCAGCTGGATTGA 1293 0.4524 MEWNAKSLGQWDWENLYSFNTKPTENPKLQPTDWSMEGDGEINVGLIYPSGSSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGKKELSKEEPVENSPAPEPSSASGEPLLTLKLGKRLYFEDVCAGSDSKKPSSVGVPTSSLTHGKKCKANSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSALSSSPYDARQLMNPFGYSRTATNIGWQDIQNSRLPQTKDFLMRPAKAFDKIPSVVTMLSDGSSDLASKGMASNGNYPGKEDPISSSDTNAAQDISRALSLLSTNSWSTHATTQRFPLASSQYWHLDQQPAANPNMCVPFSDSDNSNRFQEFQMFNAPSFGSGYPCNQLD 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151097g00019 430 Gene3D - 166 237 IPR036893 GO:0003677|GO:0005634
Stsc151097g00019 430 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Stsc151097g00019 430 MobiDBLite consensus disorder prediction 54 93 - -
Stsc151097g00019 430 FunFam Squamosa promoter-binding-like protein 14 167 237 - -
Stsc151097g00019 430 MobiDBLite consensus disorder prediction 54 123 - -
Stsc151097g00019 430 MobiDBLite consensus disorder prediction 94 109 - -
Stsc151097g00019 430 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 390 IPR044817 GO:0003677
Stsc151097g00019 430 Pfam SBP domain 176 249 IPR004333 GO:0003677
Stsc151097g00019 430 MobiDBLite consensus disorder prediction 327 351 - -
Stsc151097g00019 430 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151097g00019 Stsc-Chr151097 118304 121053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151097g00019 1 393 SBP-box Gene Family AT5G43270 40.777 7.58e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc151097g00019 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151097g00019 - - gmx:100781289 562.762