Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151096g00002 | ATGGGAGCGCCGAAGAAGAGCGGCGGAGGCAGGGTTTCCGTCTCGGAGGATTCAGACGAGCTGGTTCGTGTTCCGTTGCAGGCTATCCTCTTAGCTGACAGCTTCAATACCAAGTTCAGACCTATCACCCTCGAATGCCCGAAGGTCCTCTTGCCTCTCGTCAACATTCCCATGATCAATTACACCTTGACCTGGCTCGAATCCGCCGGCGTCGAAGACGTTTTCGTTTTCTGCTGCGCCCATTCCAAGCAAGTCATCGACTATTTGGACAAATCCGGCTGGCTCTCTCAGCCTAATTTCTCCGTAACCACCATTGAATCGCATAATTCCGTCAGCGCCGGCGACGCCCTCCGCCTAATCTACGAGCGCAACGTGATACATGGAGACTTTGTTCTCATCAGTGGTGATACTGTGAGCAACATGTCGCTTACTCAGGCGCTTGCTGAGCACAAAGAAAGGAAGAAGAAGGATAGTAATGCAGTCATGACAATGGTTATTAAACGCTCAAAAACTAACCCTGTTATTCACCAGTCTCGGCTTGGTACCGAGGAGCTTTTCATGGCCATTGATCCTGATACCAAGCAGCTTTTGTATTATGAGGAGAGGACAGACCTTTCCAAAGGGATTTTGCATCTTGATAAGTCATTGCTTGCTGATAACCCTTCCCTCACCTTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCCCCTGAAGTTCTTAGCCTATTTACGGACAATTTTGACTACCAACATCTACGGCGTCATTTTGTGAAGGGACTGCTTGTTGATGATATAATGGGGTACAAAATTTTCGTGCATGAAATCCACTCAAACTATGCTGCACGGATTGAAAATTTCCGAAGCTATGACACTGTTAGCAGGGATATAATTCATAGATGGACATATCCAATGGTGCCAGATGTTATGAATTATGGCAACACAGCTACTAAACTTGAACGGCAGGGAATGTATCGTGCTTCAGAAATATCACAATCACAATCCGCTGTTATTGGCCCCTTCACTGTTATAGGATTTGGCACCAAAATTGGGAATAACACTATAATTTCAGATTCCGTCATTGGAAAAGGATGTAAAATTGGATCAAACGTTTGCATTAAAGGTTGCTACATATGGGACCATGTCACCATAGAAGATGGCTGTAAACTTAACCACGCTATTGTTTGTAATGAGGTGACTTTGAAGTCAGGAGCTATTCTGGAACCTGGTGTCATTTTGTCTTTCAAGGTTGTAGTTGGGCAGGAGTTTGTTGTCCCTCCATATTCATATGTATCTCTATTACAACAGCCTGTTGAGGAAGACAGTGATGAGGAGCTTGAATACGCTGACAGTACTAGTGTCATCACAAGCAGAGTGGATAAGTCAGATGAAGAGGATGCATCTGAAGTACCAGACACACATATTAGCTCTGTTTCAGAGCTAGGTATGGGTGGGGTTGGTTACATCTGGCAAAAATATGAAGATAATGAAGACTCTAGGGATGATTTCTTTGAGAGAGAGGTTGAAGCAACATTCCTCAGGGCTGTGAATGAAAACATACAAGAAGACCACTTGATCTTAGAAGTTAACTCTTTAAAGTTGTCATGCAATAAGCTGACTGCTGATTGTGCGGGAGCTCTGTTTTATGCTATGATGAAGTATGCAGTAGACACTCCCCATATTTCACTTGATGGCTTGATGCAGAATGTTAAGGCTGTGCTAACAAAATGGAAGAAGGCTCTTAGATCCTATCTGACAGACATAGATGAGCAGATTGAGATCATACTGAAATTTGAAGAAATTTGTTTAGAATCTGCTAAGGAGTATGCTCCATTGTTCACCAAGATTTTGCTCTACATGTATAATGAAGATATTATTGAAGAAGATGCTATTTTAAGTTGGGAAGATGAGAAGAGAGATGCAGATGAGGCAGATAAAGTATTTGTTAATAAGGCTCAAGATTTGATCCAATGGCTAAAAGTGGCTGAAGAAGAAGACGAATAG | 2007 | 0.43 | MGAPKKSGGGRVSVSEDSDELVRVPLQAILLADSFNTKFRPITLECPKVLLPLVNIPMINYTLTWLESAGVEDVFVFCCAHSKQVIDYLDKSGWLSQPNFSVTTIESHNSVSAGDALRLIYERNVIHGDFVLISGDTVSNMSLTQALAEHKERKKKDSNAVMTMVIKRSKTNPVIHQSRLGTEELFMAIDPDTKQLLYYEERTDLSKGILHLDKSLLADNPSLTLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSNYAARIENFRSYDTVSRDIIHRWTYPMVPDVMNYGNTATKLERQGMYRASEISQSQSAVIGPFTVIGFGTKIGNNTIISDSVIGKGCKIGSNVCIKGCYIWDHVTIEDGCKLNHAIVCNEVTLKSGAILEPGVILSFKVVVGQEFVVPPYSYVSLLQQPVEEDSDEELEYADSTSVITSRVDKSDEEDASEVPDTHISSVSELGMGGVGYIWQKYEDNEDSRDDFFEREVEATFLRAVNENIQEDHLILEVNSLKLSCNKLTADCAGALFYAMMKYAVDTPHISLDGLMQNVKAVLTKWKKALRSYLTDIDEQIEIILKFEEICLESAKEYAPLFTKILLYMYNEDIIEEDAILSWEDEKRDADEADKVFVNKAQDLIQWLKVAEEEDE | 668 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151096g00002 | 668 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 15 | 306 | IPR029044 | - | |
| Stsc151096g00002 | 668 | CDD | LbH_eIF2B_epsilon | 344 | 422 | - | - | |
| Stsc151096g00002 | 668 | Pfam | eIF4-gamma/eIF5/eIF2-epsilon | 591 | 668 | IPR003307 | GO:0005515 | |
| Stsc151096g00002 | 668 | Gene3D | Hexapeptide repeat proteins | 322 | 461 | - | - | |
| Stsc151096g00002 | 668 | ProSiteProfiles | W2 domain profile. | 499 | 668 | IPR003307 | GO:0005515 | |
| Stsc151096g00002 | 668 | SUPERFAMILY | ARM repeat | 505 | 664 | IPR016024 | - | |
| Stsc151096g00002 | 668 | FunFam | Translation initiation factor eIF-2B subunit epsilon | 15 | 306 | - | - | |
| Stsc151096g00002 | 668 | SUPERFAMILY | Trimeric LpxA-like enzymes | 271 | 432 | IPR011004 | - | |
| Stsc151096g00002 | 668 | CDD | W2_eIF2B_epsilon | 502 | 668 | IPR044123 | GO:0005085|GO:0031369 | |
| Stsc151096g00002 | 668 | Pfam | Nucleotidyl transferase | 28 | 168 | IPR005835 | GO:0009058 | |
| Stsc151096g00002 | 668 | Gene3D | - | 492 | 668 | - | - | |
| Stsc151096g00002 | 668 | FunFam | Translation initiation factor eIF-2B epsilon subunit | 495 | 668 | - | - | |
| Stsc151096g00002 | 668 | Coils | Coil | 665 | 668 | - | - | |
| Stsc151096g00002 | 668 | FunFam | Trimeric LpxA-like enzyme | 319 | 452 | - | - | |
| Stsc151096g00002 | 668 | SMART | 542_3 | 579 | 666 | IPR003307 | GO:0005515 | |
| Stsc151096g00002 | 668 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 23 | 372 | IPR029044 | - | |
| Stsc151096g00002 | 668 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON | 13 | 499 | - | - | |
| Stsc151096g00002 | 668 | CDD | eIF-2B_epsilon_N | 26 | 242 | IPR035543 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151096g00002 | Stsc-Chr151096 | 15992 | 21803 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151096g00002 | 1 | 663 | Eukaryotic Initiation Factors Gene Family | AT2G34970 | 57.895 | 0.0 | 822 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151096g00002 | K03240 | - | gmx:100784894 | 1086.63 |