Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151094g00020 ATGGAGGATCCACCAACTGGCTTTCGATTCTATCCAACAGAAGAAGAGCTTGTTTCCTTCTACCTACACACCCAGCTACAACTACTACAAGGCCAAACCAATCACATTAACAGGGTCATTCCAGTGGTTGACATCAATGGCGTCGAGCCCTGGAATCTTCCATCACTAGCGGGAGAGCTGTGTAGGGAGGAGAAGGAACAGTGGTTCTTCTTCGTGCCTCGCCAAGAGAGGGAAGCGAGAGGGGGAAGGATCAATCGAACCACTGCTTCTGGCTACTGGAAAGCCACCGGCTCACCGGGATACGTCTACTCTTCCGATAACCAAGTCATTGGAGTCAAGAAAACTATGGTCTTCTACAAAGGGAAAGCTCCCTCTGGCCGCAAAACCAAGTGGAAGATGCATGAGTACCGCGCCATTCTTCAAACCCCTAATAACCAATCCCCCACACCTCCTCCTCCTCAGCTGAGGCATGAATTTAGCTTGTGTCGTGTGTACGTGATATCTGGAAGCTTTAGAGCATTTGATCGACGGCCACTGGAGGTGCCAAGAGTTCATCATGATCATCATGCCCAGCAGCAGCAGCAACAAGGAGAATCATCAGCAAGGGTGATGGGAACCAATAATAATGGGTCAAGCTCGTCGGAAACTTCGCTGTCACCAGATACTGGAGGTGGAGGAGGGTCAAGTAGCAATTGGAATAGTAGTGGGGTTCAAGTTCAAGTTCAAGAACCTCTATGGGAATGGGAACAACTCAATTGGCCATAA 765 0.4941 MEDPPTGFRFYPTEEELVSFYLHTQLQLLQGQTNHINRVIPVVDINGVEPWNLPSLAGELCREEKEQWFFFVPRQEREARGGRINRTTASGYWKATGSPGYVYSSDNQVIGVKKTMVFYKGKAPSGRKTKWKMHEYRAILQTPNNQSPTPPPPQLRHEFSLCRVYVISGSFRAFDRRPLEVPRVHHDHHAQQQQQQGESSARVMGTNNNGSSSSETSLSPDTGGGGGSSSNWNSSGVQVQVQEPLWEWEQLNWP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151094g00020 254 MobiDBLite consensus disorder prediction 193 237 - -
Stsc151094g00020 254 Pfam No apical meristem (NAM) protein 5 137 IPR003441 GO:0003677|GO:0006355
Stsc151094g00020 254 MobiDBLite consensus disorder prediction 183 237 - -
Stsc151094g00020 254 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 208 - -
Stsc151094g00020 254 ProSiteProfiles NAC domain profile. 4 167 IPR003441 GO:0003677|GO:0006355
Stsc151094g00020 254 Gene3D NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
Stsc151094g00020 254 SUPERFAMILY NAC domain 4 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151094g00020 Stsc-Chr151094 96975 98501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151094g00020 1 254 NAC Transcription Factor Family AT5G22380 56.078 1.11e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151094g00020 NAM 3.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151094g00020 - - gmx:100780264 317.005