Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151094g00009 ATGGTGGACAGGGGGGATTCAAGGGAAGCAGCAGCACAAATGAGCATGGCATCCAGGGAAGCACACATGTCCATAGCAGCTTCTTCCATGTTCCCTGGCTTCAGGTTCTGTCCCACTGACGAGGAGCTTATCTCTTACTACCTCAGGAAAAAGCTTGACGGTGATGAGGACAGTGTTCAGGTCATTTCCGAGCTTGAGCTTTGCACCTTTGAACCTTGGGATTTACCAGGGAAATCGTTCATTCAATCAGAGAACGAGTGGTTCTTCTTCTCACCAAGGGGGAGAAAGTATCCAAATGGTTCACAGAGTAAAAGGGCAACTGAATGTGGCTATTGGAAGGCAACAGGGAAAGAGCGCAACGTGAAGTCCGGTCAGAATGTGATTGGTACCAAAAGGACTTTGGTATTCCACCTTGGCCGAGCTCCTAAGGGAGAAAGGACTGAATGGATCATGCATGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTCAAGAGGAACACAGAATTCCGTATGAGCGATCATTCTAACAGAGCTTCTTCCAGTCAAATCAACAATGTAAATTCACATGAGAGTGATTGTGGTGTCTCAGAAGGGGTTACAGATCAAGGTGGTACTTCTCTGCATCTTCAAGATAAAGAGGCTGGGTGCGCCTGCAGCTCCAAGAGAAGCAGCAGTAGTAATAGTTCTCCTTCTACTACTGGCCAAATGGATTCTGTCACCGAATCCAATCCTAAGGTGGATGAAGAGGATTGTTATGCAGAGATCCTAAAGCATGATATCATCAAGTTAGATGAATCAGCACTCTCACGGGTGGCTATGGCTACCGCCACAACAACGCCGTCGCCGCCACGCCAAGGGACAGCAAACAGGAGAATAAGGCTGAGGGTTCCAAAATCAAGGGTTTCTGTTTCTCCCACTTTACCAGCAGGAATTCGTTTCCAATGCTCCAAGCAATCATCAAGGAGAAACACCATCTTCGTGCCTAACCGTTTGCTGCTGTTTACTTTCTCGGTTTTCACTTTGTTAGCTCTAAGCTTCTTCCTTATTGGAAGGTCCCAAACTACTACTGCACAATATTCTGGAGAGCTCGGAAGTTGA 1116 0.4695 MVDRGDSREAAAQMSMASREAHMSIAASSMFPGFRFCPTDEELISYYLRKKLDGDEDSVQVISELELCTFEPWDLPGKSFIQSENEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGQNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNTEFRMSDHSNRASSSQINNVNSHESDCGVSEGVTDQGGTSLHLQDKEAGCACSSKRSSSSNSSPSTTGQMDSVTESNPKVDEEDCYAEILKHDIIKLDESALSRVAMATATTTPSPPRQGTANRRIRLRVPKSRVSVSPTLPAGIRFQCSKQSSRRNTIFVPNRLLLFTFSVFTLLALSFFLIGRSQTTTAQYSGELGS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151094g00009 371 MobiDBLite consensus disorder prediction 179 212 - -
Stsc151094g00009 371 Pfam No apical meristem (NAM) protein 32 155 IPR003441 GO:0003677|GO:0006355
Stsc151094g00009 371 SUPERFAMILY NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Stsc151094g00009 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 234 - -
Stsc151094g00009 371 MobiDBLite consensus disorder prediction 224 247 - -
Stsc151094g00009 371 Gene3D NAC domain 39 177 IPR036093 GO:0003677|GO:0006355
Stsc151094g00009 371 ProSiteProfiles NAC domain profile. 30 172 IPR003441 GO:0003677|GO:0006355
Stsc151094g00009 371 MobiDBLite consensus disorder prediction 178 212 - -
Stsc151094g00009 371 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151094g00009 Stsc-Chr151094 50112 51979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151094g00009 18 287 NAC Transcription Factor Family AT2G27300 55.926 3.30e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151094g00009 NAM 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151094g00009 - - tpra:123896537 432.95