Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151094g00004 ATGAAGCGCCAGGTTCCCCTCCCTTCCACCAAGCCGCCTTTTGCTCCGCCCGCAGACTTCCATCGCTTCGCCACCGACCACCGCACAACTTCTCACAACGACGCCGACGCCATTGCCGTTAAAACTCCTATTCAGCAATTAAAGCGGAAGAGTGTTACAACTGATTTTGAAGGTGATTCTGGCATGACTCCAGCATCCATTGAAGCAGTTAATAGTCCTTTCCGGACACCAGTCTCAAGAAAGATGGGAAAGGCAAGCAAAGCCTGTCGACTTACAAAATGCAACAGATCAGGACCTCAAATCCCTGGATCAAATATCAGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGACTTGAATAAAGCTGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGCTTGGATGTTTCAAGACCAGGGCAAGCTGCTGATAGTTTTGTTAGTTTACAGGCTGAAGTTGAAAATCTTAGAAATGAGGAGCACCTGTTAGATGAGCAAATAAGAGAGATGCAAGAAAGACTAAGAGGTCTTAGTGAAGATGAAAACACTCAAAGGTATCTTTTCATTACAGAGGAAGATATAAAGAGTTTGCCCTCCTGTCAGAATGAAACCTTGATAGCAATTAAAGCACCATATTGCACTACTTTGGAGGTCCCTGATCCTGATGAGGTTGTTGATTATCCTCAGAGGAAATACAGGATTGTCCTGAGAAGCACAACGGGCCCAATAGATGTTTATCTTCTTAGTCAATTTGAAGAGAAATTTGAGATTAATGGTGTTAATGTGGGGCCAAATATTCCATCAAGCCCAGATTTCAACAAGCATCAATCAACAGTGGTCTCAAATGATGGAGGGAAGGGCCTTGAAATGGGGGGACAAGATGTATATAGGCCTTCAGATTTATCTAATGCACAGGATTTTGCAAGTGGAATCACGAAGATTGTTCCTTCAGATTTTGAGAGCAATGCTGATTACTGGCTTTTATCGGATGCTGATGTTAGCATAACAGACATGTGGAGGACAGAACCTGAAGTTGAATGGGAAAATCTGGATACTCATAAAGAAGATTATTGTATGACTCATGTGAGCCCACCACCTCCCCAAACTCCTCCCTCAAACATAAGTGAAGCACCTTCTGCATCTAACCCTGCTGTAAGTTGA 1260 0.423 MKRQVPLPSTKPPFAPPADFHRFATDHRTTSHNDADAIAVKTPIQQLKRKSVTTDFEGDSGMTPASIEAVNSPFRTPVSRKMGKASKACRLTKCNRSGPQIPGSNISLLTKKFINLIKQAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQAADSFVSLQAEVENLRNEEHLLDEQIREMQERLRGLSEDENTQRYLFITEEDIKSLPSCQNETLIAIKAPYCTTLEVPDPDEVVDYPQRKYRIVLRSTTGPIDVYLLSQFEEKFEINGVNVGPNIPSSPDFNKHQSTVVSNDGGKGLEMGGQDVYRPSDLSNAQDFASGITKIVPSDFESNADYWLLSDADVSITDMWRTEPEVEWENLDTHKEDYCMTHVSPPPPQTPPSNISEAPSASNPAVS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151094g00004 419 SMART E2F_TDP_2 101 166 IPR003316 GO:0005667|GO:0006355
Stsc151094g00004 419 Pfam E2F/DP family winged-helix DNA-binding domain 106 166 IPR003316 GO:0005667|GO:0006355
Stsc151094g00004 419 SUPERFAMILY "Winged helix" DNA-binding domain 104 164 IPR036390 -
Stsc151094g00004 419 Coils Coil 117 137 - -
Stsc151094g00004 419 Gene3D - 103 168 IPR036388 -
Stsc151094g00004 419 MobiDBLite consensus disorder prediction 392 419 - -
Stsc151094g00004 419 Pfam E2F transcription factor CC-MB domain 182 281 IPR032198 GO:0046983
Stsc151094g00004 419 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151094g00004 419 SUPERFAMILY E2F-DP heterodimerization region 180 282 IPR037241 -
Stsc151094g00004 419 CDD E2F_DD 181 283 IPR032198 GO:0046983
Stsc151094g00004 419 Coils Coil 179 213 - -
Stsc151094g00004 419 Gene3D - 174 283 - -
Stsc151094g00004 419 PANTHER TRANSCRIPTION FACTOR E2F 65 378 IPR015633 GO:0000978|GO:0006357
Stsc151094g00004 419 FunFam E2F transcription factor 1 100 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151094g00004 Stsc-Chr151094 24743 28616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151094g00004 2 414 E2F-DP Transcription Factor Family AT5G22220 48.283 2.21e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc151094g00004 E2F_CC-MB 6.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151094g00004 K06620 - gmx:100819817 556.984