Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151092g00011 ATGGAGAGCACCGACTCATCCACCGGTTCGCAACAACCGAACCTTCCACCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTTGTTCACTACCTCAAGAAGAAAGCTGCATCGGCTCCTCTCCCAGTCTCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCAGATAAGGCGACGTTTGGCGAGCAAGAGTGGTACTTCTTTAGCCCAAGGGACAGGAAATATCCGAACGGGGCTCGGCCAAACAGGGCGGCAACTTCGGGGTACTGGAAGGCGACCGGGACTGATAAGCCGGTGTTGACCTCTGGTGGGACCCAGAAGGTTGGTGTGAAGAAGGCTTTGGTCTTCTATGGAGGAAAGCCACCCAGAGGGATAAAGACTAATTGGATCATGCATGAATATAGACTTGCTGATAACAAACCTAACAATAGGCCTCCTGGTTGTGACTTGGGTAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGTTGTGCCGAATCTACAAGAAGAACAACACACATAGGTCTCCAATGGAACATGAAAGGGAAGATTCCATGGATGACATGATTGGAGGGATCCCTCCTTCCATCAACGTGGGACAAATGAATGCTAGATTTCATCTCTCAAAAATGTNNNNNNNNNNGCAACGCTTTGTTGGAAAGCGACCACCACCATCACCACCACCACCACCACCAGAATCTTCTGGAAGGGATGATGATAGGAGGAAACAACAACAACAACAGCAATGGCAGTGTTGTTGTTCCTCCAAGCATGTTGGGATCAGCCTCAAACACCATTAA 819 0.4933 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVSIIAEVDLYKFDPWELPDKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKNNTHRSPMEHEREDSMDDMIGGIPPSINVGQMNARFHLSKMXXXXQRFVGKRPPPSPPPPPPESSGRDDDRRKQQQQQQWQCCCSSKHVGISLKHH 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151092g00011 272 PANTHER NAC TRANSCRIPTION FACTOR 56 15 229 - -
Stsc151092g00011 272 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Stsc151092g00011 272 MobiDBLite consensus disorder prediction 181 272 - -
Stsc151092g00011 272 MobiDBLite consensus disorder prediction 1 17 - -
Stsc151092g00011 272 FunFam NAC transcription factor 56 24 181 - -
Stsc151092g00011 272 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Stsc151092g00011 272 MobiDBLite consensus disorder prediction 1 22 - -
Stsc151092g00011 272 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Stsc151092g00011 272 SUPERFAMILY NAC domain 7 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151092g00011 Stsc-Chr151092 154085 156430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151092g00011 1 213 NAC Transcription Factor Family AT3G15510 75.349 1.40e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151092g00011 NAM 5.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151092g00011 - - gmx:100170710 435.647