Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151092g00010 ATGGGAATTCAAGAGAAAGACCCTCTCTCGCAGTTGAGTTTACCGCCGGGTTTCCGGTTCTATCCAACGGATGAGGAGCTTCTCGTACAGTATCTGTGCCGCAAGGTTGCCGGCCACCATTTCTCCCTGGAAATCATCGGCGAAATCGATTTGTATAAGTTCGACCCGTGGGTCCTTCCAAGTAAGGCGATCTTTGGAGAGAAAGAATGGTACTTCTTTAGCCCACGAGACAGAAAATACCCTAATGGTTCTCGGCCTAATAGGGTAGCCGGGTCAGGCTACTGGAAAGCCACCGGAACCGATAAGATTATCACGACGGAAGGTAGAAAAGTTGGAATCAAGAAAGCCTTGGTTTTCTACATCGGCAAGGCACCTAAAGGAACCAAAACCAACTGGATTATGCACGAGTATCGCCTCTTAGACTCTACCCGCAAGAACGGCAGCTCCAAGCTTGACGATTGGGTTCTGTGCCGTATATACAAGAAGAATTCAAGCGCGCAGCAGAAGGTACAAAACGGCGTCGTTTCGAGTAGCGAGCAATACACCACCCAATACAGCAACGGATCTTCGTCAAACTCATCTTCCTCCCACCTCGACGAGGTGCTCGAGTCGCTACCGGAGATCGACGACCGTTGCTTTGCCCTGCCACGTGTCAACTCCTTAAGAGCGCTTCAGCATCAGCACCACCATCACCAAGAAGACACCAAGGTCGGTCTACTCCAGCAGCAGCAACAGGGTCTCGTATCTTCTGGCGCCGGTAGCTTCTTGGAATGGGCTTCCGGCCCAGGGATTCTGAACGATTTGGGCCAGGCCCAAGAGGGGATTGTAAATGTTAACTACGGAAATGACCTCTTTGTCCCTTCTTCTAACATGGTGGCAGCAAAGATAGAAGAGGAGGTTCAGAGCGGTGTGAAGAATACTCAATCTTCATTCTTTCAGCAGGGACCGAACCCGAATGACTTCACACAAGGATTCTCAAACCAACTAGATCCGTACGGGTTTAGTCGGTACCCGGTCCAACCGGTTGGGTTCGGGTTCAGGCAATGA 1047 0.5081 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSTRKNGSSKLDDWVLCRIYKKNSSAQQKVQNGVVSSSEQYTTQYSNGSSSNSSSSHLDEVLESLPEIDDRCFALPRVNSLRALQHQHHHHQEDTKVGLLQQQQQGLVSSGAGSFLEWASGPGILNDLGQAQEGIVNVNYGNDLFVPSSNMVAAKIEEEVQSGVKNTQSSFFQQGPNPNDFTQGFSNQLDPYGFSRYPVQPVGFGFRQ 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151092g00010 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 226 - -
Stsc151092g00010 348 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Stsc151092g00010 348 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Stsc151092g00010 348 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Stsc151092g00010 348 FunFam NAC domain-containing protein 72-like 23 167 - -
Stsc151092g00010 348 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151092g00010 Stsc-Chr151092 122543 124530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151092g00010 1 282 NAC Transcription Factor Family AT3G15500 63.380 2.16e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151092g00010 NAM 3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151092g00010 - - gmx:732651 463.766