Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151091g00001 ATGAAGTGGGAAGTAGAAGTACTCTCTCCTTCTTCACCTTATCTTCACCATAACAACAACACAACTCATTGGTTTCTTGGAGATAACAACATTAACAACAACAAGAGTAGCACAAAATGGACACATGAAGAGAACAAATTGTTTGAGAATGCTCTTGCTTTGCATGATAAAGAGACACCAGATAGGTGGCATAGGGTAGCTGAGATGATTCCAGGGAAAACTGTTGTTGATGTGATGAAGCAGTACCATGAATTGTTAGCAGATGTTAATGATATTGAAAATGGATTGGTACCAATTCCTGGTTACAGTACTAGCACAACAACAACAACAACTACTTCACCTTTTACATTGGATTGGGTCAACAATAGTTGTTATGATGGGTTCAAAGGAATTGGTGCTACTGCTGCTGCTGCAAAGAGATCTTCTTCAAGAACACCAGAACAAGAGAGGAAGAAAGGTGTGCCTTGGACTGAAGAAGAGCATAAATTGTTCTTACTTGGTCTAAAGAAGTATGGCAAAGGAGATTGGAGGAACATTTCGCGCAACTTCGTGATCACTCGGACGCCAACCCAAGTTGCAAGCCATGCTCAGAAGTACTTCATCCGGCAACTCTCCGGCGGCAAAGACAAGAGGAGGGCAAGCATCCATGACATAACAACAGTTAATCTCACAGACAACAACAACAACAACAGAACACTTGCTAATACTTCCTCAGAAGATAGCAGCAGCAAGAGATCCACTTCACCACAACAACAACAACATAATAATAATAGTAATTCCATGTTGTTCTCAAATAATTCAAATGCTATAGGGAAATTCCAATGGAATAATGATGATACTAAGTCAAATTCAAGAGGAGGAGGATCTACTATGACATTCAACAATGATGATGAAGCATTATTTGTGTCTCATCATCATCATTATGGTGTTAATAACTCCTCTTATGGTTTTAAGATGCAGGGTGGTCAGAATATGCATCATAAAAGTGGTCTTGTTAATGAGTCTTCTTACTTAGGACTTCAGACACAAAACATTGCTTTTCAAATGTAG 1050 0.3905 MKWEVEVLSPSSPYLHHNNNTTHWFLGDNNINNNKSSTKWTHEENKLFENALALHDKETPDRWHRVAEMIPGKTVVDVMKQYHELLADVNDIENGLVPIPGYSTSTTTTTTTSPFTLDWVNNSCYDGFKGIGATAAAAKRSSSRTPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTDNNNNNRTLANTSSEDSSSKRSTSPQQQQHNNNSNSMLFSNNSNAIGKFQWNNDDTKSNSRGGGSTMTFNNDDEALFVSHHHHYGVNNSSYGFKMQGGQNMHHKSGLVNESSYLGLQTQNIAFQM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151091g00001 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 151 203 IPR006447 GO:0003677
Stsc151091g00001 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 204 IPR017930 -
Stsc151091g00001 349 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Stsc151091g00001 349 Pfam Myb-like DNA-binding domain 155 200 IPR001005 -
Stsc151091g00001 349 MobiDBLite consensus disorder prediction 222 263 - -
Stsc151091g00001 349 CDD SANT 39 86 IPR001005 -
Stsc151091g00001 349 ProSiteProfiles Myb-like domain profile. 32 86 IPR001005 -
Stsc151091g00001 349 SUPERFAMILY Homeodomain-like 38 94 IPR009057 -
Stsc151091g00001 349 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 33 268 IPR043363 -
Stsc151091g00001 349 Gene3D - 31 99 - -
Stsc151091g00001 349 FunFam transcription factor MYB1R1 154 205 - -
Stsc151091g00001 349 CDD SANT 155 200 IPR001005 -
Stsc151091g00001 349 FunFam Transcription factor SRM1 32 99 - -
Stsc151091g00001 349 MobiDBLite consensus disorder prediction 272 291 - -
Stsc151091g00001 349 Gene3D - 154 204 - -
Stsc151091g00001 349 SMART sant 36 88 IPR001005 -
Stsc151091g00001 349 SMART sant 152 202 IPR001005 -
Stsc151091g00001 349 SUPERFAMILY Homeodomain-like 149 203 IPR009057 -
Stsc151091g00001 349 ProSiteProfiles SANT domain profile. 156 204 IPR017884 -
Stsc151091g00001 349 ProSiteProfiles Myb-like domain profile. 148 200 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151091g00001 Stsc-Chr151091 10115 12105 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151091g00001 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151091g00001 - - cam:101514273 357.451