Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151090g00016 ATGCCGTCATCCAAGAGAATGGTAGATCAGAGAGTAAAGGTGGTTACCAATATTCAAGTTAGTGATAGTGCAAAAGTTCCTAGGACGCTCAGACGAAGACCTTGGATTAATTATGGACAATATGAGAATTGTTATGAAGAAGACCCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTTTCTTCCCAGGGGAGTTATCCGTGGATGTCCAGATTGCAGTAATTGCCAGAAGGTTGTTGCAAGATGGCGACCAGAAGATGCTCGTAGGCCAAAGCTTGAGGATGCTCCTGTTTTCTACCCCACAAAAGAGGAGTTTCAAGATACTTTAAAATATATATCAAGCATTCGCTCCCGTGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCTTCTTCTTGGAAACCCCCTTGTCCACTCAAGGAAAAAAATATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGAATCAGTGAGAAAGGTGTCAAGGTTTCAAAGCAATATGAAAAGAAAAAGGAGAAGGGTCACGAGAATGGGAATGGAAAATGGCACCATCGTAGGACTGGACATGGGACTTTGTGAAGCTGAAAGTTTTGGGTTTGAACCTGGTCCACAATTTACCTTGGAAACATTTCAGAGATATGCTGATGATTTCAAGGACAAATACTTCAGAGAAAATGAGAATGTGTCTCATTTAGGAACCAATACAACAATTTTAAATAGCACCATTGAGCCTTCTGTGGAGAACATTGAGGGTGAATATTGGCGGGTGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGAAATTCTAGTAATGTTGGTTCCACGTCACATGAAGATTATATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCCTTGCTCTGTTATGAAAGCGGTGATATATCTGGTGTTCTAGTGCCGTGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGACCACCATTTATATTCCTTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGTAAAGATGCTTGCAAATTGGAAGAGGCCATGAGGAAGCATTTACCAGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCCATCCTTAAGTCTATGGGAGTGCCAGTTTATAGGTGTGTTCAAAACCCGGGAGAATTTGTTCTGACATTTCCTCGAGCCTATCATTCTGGCTTCAATTGCGGCTTCAACATCGCAGAGGCTGTTAATGTTGCTCCAGTTGACTGGCTGCCCCATGGGCATATTGCTATAGATCTGTATAAGGAGCAGCGGCGCAAGACTTCTATATCCCATGATAAGCTATTACTGGGGGCTGCAAGGGAAGCTGTAAGAGCCCAGTGGGAGCTTAATTTGCTAAAAAAAAATACTTCTGATAATCTACGATGGAAAGATGTCTGTGGAAAGGATGGTCTTCTAGCAACTGCACTCAAGACACGTGTTGAGATGGAGCGAGTCAGAAGAGATTTTCTATGTAATTCTTCACAAGCGTTAAAAATGGAGAGCAACTTCGATGCAACAAGTGAAAGGGAATGCAGCATTTGCTTTTTTGACTTACATTTATCCGCATCTGGTTGTCGATGTTCCCCGGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCGCTTGGGATTCCAAATTCTTCCTCTTCCGCTATGATATTAGTGAATTAAATATTCTTGTTGAGGCATTGGAAGGAAAACTAAGTGCTGTATACAGATGGGCAAAATTAGATCTCGGGCTTGCACTGACTTCTTATATTTCAGCAGATAAGGAAAAACTCAAGGAATTGAGATTTCAGTCATCAAACTTGTCTCATCCTTGCAAGTCCAATGCACATAAAGAGATGACTTTGCATCAATCAAATGAATTTGTTGAAGATACTCGGTTAATGGATACCCCAATAGTGGATCAATCAAATTCAGAGAAGGGCAAAGATCAGAGTTTCCCTCAGCAGAAAAAACCCGTAGAAGTCGTGTCTCCTTTGAGTCAGAAGAAGGAACATTCAACACTTACTAATATACAACCTGCAAATGAGATGGGTAATCATAAGACTTTTGTTAATAAAGAAGGATCTGCTAATTGCAGAATAAAGCTGAGTCGCCTAGGTTGCCAAACATCTCAAGAGGATTTGTCATTTGTTCTATGTCTTCCCGTGGCTCAAGCTGAGCATGGAGGAGGGAAAAGTTCACTACACAAACGTAACGCTAGTAGTATACATCTTAGTGAAGATAAAGTTGATGAGGTGAAACCAGAGACCAATGGACGGAAGGAGCATTCTCATTTTGATAAAGGAAGTTCATGTAATAATGTGGAAAATACAAAGTTGATCATCCGCATGAAAGATCCTGCTGCTATGGGTGACAAGGAAGCTATTGCATTTCCCCAAGCGAATAAGAGTTCTGATTCAACTCGGCTTTTGCATGTTAAACAGGAATGCCAAGAAAACAGGGAACCGGCAATAGCTTCTACCCCAATAGATCTTTCTTGTCAAGATGGTCCTACTGCAACAGAATCAGTTAAAACTATTCCAGATTCTTTAACTGTAGATGCCAACAACCGTTGCCAGGAAAGTTCTGCGAGTTGTTCTTTAAATCCACAACATTCTGTCCCCATCAAGGTTAATAATGAGGATGCTCACGAAAAGCCTGGAGGGTGTGGCACTTCTAGTGTAGTTGAAAGTGTAAGAGCTGTTAATGGAAACACATGCAGTCTAAACAATTACCGCCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAACATTGAGCCTTTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATTTCCTAAGGGATTTAGAAGCCGTGTTAGATACATAAATATCTTAGACCCATCCAATATGTGCTATTACATTTCAGAAATTCTTGATGCTGGACGCGACAGGCCTCTATTTATGGTTACCTTGGAAAATTGTCCAAATGAGGTCTTCGTTCATATTTCAGCTGCAAGATGCTGGGAACTAGTAAGAGAGAGAGTTAACCAAGAGATTGCAAAACAGCATAAGCTGGGAAGGAAGGGTCTTCCTCCTTTACAGCCTCCCGGAAGCCTTGACGGCTTTGAAATGTTTGGATTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTGGATAGAAGTCGAGTCTGTAGTGAATACTGGGATTCTCGGCCGTACTCCCGGCCTCAAGGGCAGATTTCACAACCTCGCCAAACCAATTCAAATGGTGGAAATGGTCAAGGGGTTCTCGTGAATCAGCACTTGCCCAATGGAGGTGTTGCAGCATTACAGAGCCTATTTAGAAAGGCCAATGCTGAAGAATTGAGCTCCCTGTACAGCATTTTTAGTGACAAGCCAGAGGCTGACCGGAACCTAATTGCGCGACTTCTAAATGAAGAGATTCACAAATCCCAACCGTCGTCGTAG 3624 0.4214 MPSSKRMVDQRVKVVTNIQVSDSAKVPRTLRRRPWINYGQYENCYEEDPDCERLDQNFSSRPFLPRGVIRGCPDCSNCQKVVARWRPEDARRPKLEDAPVFYPTKEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKNIWEGSKFATRVQRIDKLQNRESVRKVSRFQSNMKRKRRRVTRMGMENGTIVGLDMGLCEAESFGFEPGPQFTLETFQRYADDFKDKYFRENENVSHLGTNTTILNSTIEPSVENIEGEYWRVVESPTEEIEVLYGADLETGVFGSGFPRNSSNVGSTSHEDYIKSGWNLNNFARLPGSLLCYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSMGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNIAEAVNVAPVDWLPHGHIAIDLYKEQRRKTSISHDKLLLGAAREAVRAQWELNLLKKNTSDNLRWKDVCGKDGLLATALKTRVEMERVRRDFLCNSSQALKMESNFDATSERECSICFFDLHLSASGCRCSPDRYACLDHAKQFCSCAWDSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSYISADKEKLKELRFQSSNLSHPCKSNAHKEMTLHQSNEFVEDTRLMDTPIVDQSNSEKGKDQSFPQQKKPVEVVSPLSQKKEHSTLTNIQPANEMGNHKTFVNKEGSANCRIKLSRLGCQTSQEDLSFVLCLPVAQAEHGGGKSSLHKRNASSIHLSEDKVDEVKPETNGRKEHSHFDKGSSCNNVENTKLIIRMKDPAAMGDKEAIAFPQANKSSDSTRLLHVKQECQENREPAIASTPIDLSCQDGPTATESVKTIPDSLTVDANNRCQESSASCSLNPQHSVPIKVNNEDAHEKPGGCGTSSVVESVRAVNGNTCSLNNYRQKGPRIAKVVRRINCNIEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINILDPSNMCYYISEILDAGRDRPLFMVTLENCPNEVFVHISAARCWELVRERVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCSEYWDSRPYSRPQGQISQPRQTNSNGGNGQGVLVNQHLPNGGVAALQSLFRKANAEELSSLYSIFSDKPEADRNLIARLLNEEIHKSQPSS 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151090g00016 1207 Gene3D - 980 1117 - -
Stsc151090g00016 1207 Pfam JmjC domain, hydroxylase 340 456 IPR003347 -
Stsc151090g00016 1207 Pfam jmjN domain 99 132 IPR003349 -
Stsc151090g00016 1207 MobiDBLite consensus disorder prediction 1124 1151 - -
Stsc151090g00016 1207 SMART JmjN_1 97 138 IPR003349 -
Stsc151090g00016 1207 SMART fyrc_3 1037 1131 IPR003889 GO:0005634
Stsc151090g00016 1207 MobiDBLite consensus disorder prediction 691 723 - -
Stsc151090g00016 1207 ProSiteProfiles FYR domain FYRN motif profile. 973 1031 IPR003888 GO:0005634
Stsc151090g00016 1207 SMART fyrn_3 987 1031 IPR003888 GO:0005634
Stsc151090g00016 1207 FunFam Putative lysine-specific demethylase JMJ16 979 1117 - -
Stsc151090g00016 1207 SUPERFAMILY Clavaminate synthase-like 308 500 - -
Stsc151090g00016 1207 MobiDBLite consensus disorder prediction 708 723 - -
Stsc151090g00016 1207 MobiDBLite consensus disorder prediction 800 820 - -
Stsc151090g00016 1207 Gene3D Cupin 83 457 - -
Stsc151090g00016 1207 ProSiteProfiles JmjC domain profile. 310 473 IPR003347 -
Stsc151090g00016 1207 SMART cupin_9 310 473 IPR003347 -
Stsc151090g00016 1207 MobiDBLite consensus disorder prediction 1124 1152 - -
Stsc151090g00016 1207 Pfam C5HC2 zinc finger 563 613 IPR004198 -
Stsc151090g00016 1207 Pfam F/Y rich C-terminus 1035 1119 IPR003889 GO:0005634
Stsc151090g00016 1207 Pfam F/Y-rich N-terminus 986 1028 IPR003888 GO:0005634
Stsc151090g00016 1207 PANTHER LYSINE-SPECIFIC DEMETHYLASE 91 1111 - -
Stsc151090g00016 1207 MobiDBLite consensus disorder prediction 800 821 - -
Stsc151090g00016 1207 ProSiteProfiles JmjN domain profile. 98 139 IPR003349 -
Stsc151090g00016 1207 ProSiteProfiles FYR domain FYRC motif profile. 1033 1123 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151090g00016 Stsc-Chr151090 124322 132652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151090g00016 34 1201 JUMONJI Transcription Factor Family AT1G08620 54.629 0.0 1188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc151090g00016 JmjC 4.9e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151090g00016 K11446 - gmx:100800271 1882.46