Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151090g00013 ATGGATATGGAATCATGTGTGCCTCCGGGATTTAGATTTCACCCAACAGAAGAAGAACTTGTGGGGTATTACCTCAAGAGGAAGATTAATTCCCTCAAAATTGATCTAGATGTTATAGTTGAGATCGATCTCTACAAAATGGAACCATGGGACATACAAGATAAATGCAAGCTAGGATATGAGGAACAAAATGAGTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCAACAGGAACAAGAACTAACAGAGCAACAGCTGCTGGATTCTGGAAAGCAACTGGGAGGGACAAGGCTGTTATGTCAAAGAACAGGATCATTGGTATGAGGAAGACTTTGGTGTTCTACAAAGGACGTGCCCCTAATGGAAGGAAAACCGATTGGATCATGCATGAATATAGGCATCAAACCTCTGAACATGGCCCTCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGCATTTAGAAAACCAAGTCCAAGTCATCATCAAAGGCAACTAGGTTTTGATCCATGGTGTAGTAATCAAGCACATTATTTCAGAGATCAAAGTAGCAGCAGCTATGGTGTTGGTGATGGAATAAGGCCCTTATCAATCACAGATATTCTAACTTCCCAAACCCACCATCATCACCCTACTGAAGGCACAAATTTTAGTCATTCCTTTGGTTGGGATCATCATCAACAACAAGAACAACAACAATTTCTAATATCAAATAATAATAATAATAATAATCAACAACTCATTGAGCTTCCACAGCTAGATAGCCCTACTAGTGCTCCAAGTTTTGCACTCAAAGAATCATCACCCATTAACAATGAAGAGTATTGCAGTGATGAGAGGAACAACAACAACAACAATGGTGGAGGAATTGATTGGAAAAGCTTGGATAACTTGTTTGCTGATACTACTTCTAGTTACTTCTCAAATCCAAACATGTCTCAATTCATGACCATGATTCCACAACAACAACAATCTCATAATCATCATCATCATCATCATCTAGGTTGTTTCCCTGATTCATAA 1023 0.392 MDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDKCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHHQRQLGFDPWCSNQAHYFRDQSSSSYGVGDGIRPLSITDILTSQTHHHHPTEGTNFSHSFGWDHHQQQEQQQFLISNNNNNNNQQLIELPQLDSPTSAPSFALKESSPINNEEYCSDERNNNNNNGGGIDWKSLDNLFADTTSSYFSNPNMSQFMTMIPQQQQSHNHHHHHHLGCFPDS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151090g00013 340 MobiDBLite consensus disorder prediction 253 282 - -
Stsc151090g00013 340 FunFam NAC domain-containing protein 16 160 - -
Stsc151090g00013 340 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Stsc151090g00013 340 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Stsc151090g00013 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 257 - -
Stsc151090g00013 340 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Stsc151090g00013 340 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151090g00013 Stsc-Chr151090 60397 63949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151090g00013 3 340 NAC Transcription Factor Family AT1G71930 55.618 7.12e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151090g00013 NAM 5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151090g00013 - - gmx:100812904 465.307