Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151090g00008 ATGCAGAAGAATAATCCTGCAGCAAAATCATCATGTTCAAAAGGCACTGTGCTGCCACATCAAACCCCAAGATTAAGGGACCATTACCTTCTTGGGAAGAAGCTTGGTCAGGGGCAATTTGGTACAACCTACCTCTGCACACAGAAATCCACAGGGAAGCTCTATGCCTGCAAATCAATCCCAAAGAGGAAGCTTCTTTGCCAAGAAGACTATGAGGATGTGTGGAGGGAGATTCAGATCATGCACCATTTGTCAGAGCATCCAAATGTGGTGCAGATTCAAGGCACCTATGAGGATTCTGTGTTTGTGCACATTGTCATGGAGCTTTGTGCAGGGGGTGAGCTCTTTGATAGGATCATTCAGAAGGGCCATTACAGTGAGAGAGAGGCTGTTAAGTTGATTAAGACCATTGTTGGTGTTGTTGAGGCTTGTCACTCTCTTGGTGTCATGCATAGGGACCTCAAGCCTGAGAATTTTCTCTTTGATACCCCTAATGAAGATGCTAAGATGAAAGCCACTGATTTTGGCCTCTCTGTCTTCTACAAGCCAGGACAGACTTTCCATGATGTAGTCGGAAGTCCCTATTATGTTGCCCCTGAGGTCTTGTGCAAGCAATATGGACCCGAAGTGGATGTATGGANNNNNNNNNNGTTGAGTGGAGTCCCGCCTTTCTGGGCTGAAACCGAGTCTGGAATTTTCAAACAGATTTTACACGCGGAACTGGATTTTGTATCTGAACCGTGGCCAAGTATCTCAGAAGGTGCTCAAGATTTGGTAAAAAGGATGCTGGATAGGGATGCCAAGAAAAGGATTACCGCTCATGAAGTCTTATGCCATCCTTGGATTGTTGATGAGGAAAATGCACCCGACAAGCCTTTGGATTCTGCTGTTTTGACACGGCTGAAGCATTTCTCAGCGATGAATAAACTTAAGAAGATGGCACTGCGTGTCATAGCCGAAAGACTTTCTGAGGAAGAAATAGGTGGGTTGAAGGAGCTATTTAAAATGATTGACACGGACAACAGCGGGACAATTACATTTGAAGAACTCAAGGATGGGTTGAAAAGCGTGGGCTCCAATCTCATGGAATCTGAAATTAAATCCCTTATGGAAGCGGCTGATATAGACAACAGTGGAACAATTGATTATGGTGAATTTCTTGCTGCCACACTGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTCGCGGCTTTTGCCTACTTCGATAAAGATGGTAGTGGTTACATTACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTTGGCCTAGGCGAGGTACATCTGGACGAAATGATCCAAGAGATTGATCAAGACAATGATGGGAGAATTGATTATGGGGAGTTTGTAGCAATGATGAAAAAGGGTGATCCAGATGTGGGGAGGAGCAGAACCCTGAAAGGCAATTTGAACTTCAATATTGCAGATGCATTTGCAGTGAAAGAATAG 1470 0.4401 MQKNNPAAKSSCSKGTVLPHQTPRLRDHYLLGKKLGQGQFGTTYLCTQKSTGKLYACKSIPKRKLLCQEDYEDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHIVMELCAGGELFDRIIQKGHYSEREAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPNEDAKMKATDFGLSVFYKPGQTFHDVVGSPYYVAPEVLCKQYGPEVDVWXXXXLSGVPPFWAETESGIFKQILHAELDFVSEPWPSISEGAQDLVKRMLDRDAKKRITAHEVLCHPWIVDEENAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKSVGSNLMESEIKSLMEAADIDNSGTIDYGEFLAATLHLNKMEREENLVAAFAYFDKDGSGYITIDELQQACKDFGLGEVHLDEMIQEIDQDNDGRIDYGEFVAMMKKGDPDVGRSRTLKGNLNFNIADAFAVKE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151090g00008 489 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Stsc151090g00008 489 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Stsc151090g00008 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 456 - -
Stsc151090g00008 489 SUPERFAMILY EF-hand 321 461 IPR011992 -
Stsc151090g00008 489 SMART serkin_6 29 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151090g00008 489 CDD EFh 330 389 IPR002048 GO:0005509
Stsc151090g00008 489 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Stsc151090g00008 489 ProSiteProfiles EF-hand calcium-binding domain profile. 435 466 IPR002048 GO:0005509
Stsc151090g00008 489 Pfam Protein kinase domain 31 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151090g00008 489 FunFam Calcium-dependent protein kinase SK5 197 287 - -
Stsc151090g00008 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Stsc151090g00008 489 Gene3D - 291 464 - -
Stsc151090g00008 489 SUPERFAMILY Protein kinase-like (PK-like) 25 291 IPR011009 -
Stsc151090g00008 489 ProSiteProfiles Protein kinase domain profile. 29 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151090g00008 489 Pfam EF-hand domain pair 330 390 IPR002048 GO:0005509
Stsc151090g00008 489 Pfam EF-hand domain pair 400 461 IPR002048 GO:0005509
Stsc151090g00008 489 FunFam CDPK-related kinase 3 21 189 - -
Stsc151090g00008 489 CDD STKc_CAMK 28 281 - -
Stsc151090g00008 489 Gene3D Transferase(Phosphotransferase) domain 1 115 290 - -
Stsc151090g00008 489 FunFam Calcium-dependent protein kinase 1 290 464 - -
Stsc151090g00008 489 ProSiteProfiles EF-hand calcium-binding domain profile. 325 360 IPR002048 GO:0005509
Stsc151090g00008 489 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Stsc151090g00008 489 CDD EFh 402 461 IPR002048 GO:0005509
Stsc151090g00008 489 FunFam Calcium-dependent protein kinase 1 31 114 - -
Stsc151090g00008 489 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Stsc151090g00008 489 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Stsc151090g00008 489 SMART efh_1 435 463 IPR002048 GO:0005509
Stsc151090g00008 489 SMART efh_1 401 429 IPR002048 GO:0005509
Stsc151090g00008 489 SMART efh_1 329 357 IPR002048 GO:0005509
Stsc151090g00008 489 SMART efh_1 365 393 IPR002048 GO:0005509
Stsc151090g00008 489 ProSitePatterns EF-hand calcium-binding domain. 338 350 IPR018247 -
Stsc151090g00008 489 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151090g00008 Stsc-Chr151090 43425 47067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151090g00008 3 487 EF-hand Containing Proteins AT1G35670 80.816 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc151090g00008 Pkinase 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151090g00008 K13412 - gmx:547887 874.004